G669230


Basic Information

Item Value
gene id G669230
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 7253783 ~ 7256196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU762309
GTAGCTGATTGCCTTTCTACCATTGTAGGGGGTGTACTGGTGTTTGATAGGTTTTTACCAATGATGTAtgtaaaccctggattgctaatgctatgtattggccaatgagatgCTTTGAAgtcaccggtcggccatattggctctCCTCAGAAAAGCAGTCCtctaggaatgaatggaattctacagtatttcattgAAATgcttcaaggacaaaattacatgtatttaagtattttttgtTATAGTGGGAACAGTAATATCAGtacttaattttttaaatttttttaaattctatatatttttttgtatgtttAGTTCAcacaatataatttaaaagtatgcttTAAGTTGTCTGTAAAagaataaatgtggcaaaaacaAATATAGACatttataaatgcatttctatatctTCCTAGGTAATTTTTTTTACACTGGTGGGGGAGTACCAAGATGGAGGCGCGGTGGCTTCAAAACAGTGCccctttatcagtcatctagtgtatatagaAAGCATAGTGGTTTTTCATGGTATTTTTCATTGTAGTTCATAGATTTCGGCACCAGACGGTGCTACTGATACATGCTGCGTTGCTATATGAAGCTGATACACTGCAGAGCTGTTGATGAAAGGGTCGcgacacattacacacactgttctactgtagtGAGTCTCAAATCACAccttattcccttcatagtgcactgctCGGCTCTGCTCAGACCTACTGCActgtaggggatagggtgtcgTTTGTAGAGCAGACAATGTTCCGTTTAGTTTTAGCTTTACAAATTGTGTTTCTCAATACAACTTTCCATGATAATGTACATTCGTTTAATGTTAGTTTTTAAAGCTATGAGCATTAACAAGGCCTGGAAAAAGGTGTTGACTTTTTATTTCGATGCTCTAGAAATATTCCATCTGTGATTCTATCTATGATGACATACTTCAGGTTTACGCCATATTATCCACTAGATAGCTGCTGTTTCCGGAGTAGCCCATCGAATGGACACTTAGAAACGTATCATCCAGACTAGCAAAGGACCAGCAAGAGATTTGTCATGTGTCCAACGTCCGTCCTCATCTTCTTCTGTCTTGCAACTTCAATGAAGTTAATTATTTAACTGTTCATGATACCCCTATATCCCTCGTTTAGCCTTTTGACCAGATTGGCTATAGGAACTGATCATAGGACTGACCTCTACTGTCTGCAGCTACTGACTCAATGTTACTACCGCTACTGTCAAAAACTACTGTTTGTGTGCAAGTGATAATAAGGTATGTCGTTTTGAGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTATGGATGAAATACAGGACTTTGATCTCTAGATACAGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTGATACAGGTGAAATACAGGACAATGATCTATAAGGGTGAAATACAGGACAATGATCTATACGGGTGAAATACAGGACAATGATCTATAAGGGTGAAATAGAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATTTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACAATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTGTGCTGATGAAATGTATATCTGTGCTGTTTGATCATGACTACTTGAATTACATTTGGTGGAAATACATAACGAGCAACGTTGTAATACTTTCAGATGTTTATTGAATAAATACTGGCAGATGTATGActcatcatgctgtgtggtaactTGATGAAATAGAAGGGTACGATTGGCCTATGTCATGGACCAATAGGAATCAATAAAGCATGAATTGGATTGAATTCCGGGCAAACGGC
>TU762312
GTAGCTGATTGCCTTTCTACCATTGTAGGGGGTGTACTGGTGTTTGATAGGTTTTTACCAATGATGTAtgtaaaccctggattgctaatgctatgtattggccaatgagatgCTTTGAAgtcaccggtcggccatattggctctCCTCAGAAAAGCAGTCCtctaggaatgaatggaattctacagtatttcattgAAATgcttcaaggacaaaattacatgtatttaagtattttttgtTATAGTGGGAACAGTAATATCAGtacttaattttttaaatttttttaaattctatatatttttttgtatgtttAGTTCAcacaatataatttaaaagtatgcttTAAGTTGTCTGTAAAagaataaatgtggcaaaaacaAATATAGACatttataaatgcatttctatatctTCCTAGGTAATTTTTTTTACACTGGTGGGGGAGTACCAAGATGGAGGCGCGGTGGCTTCAAAACAGTGCccctttatcagtcatctagtgtatatagaAAGCATAGTGGTTTTTCATGGTATTTTTCATTGTAGTTCATAGATTTCGGCACCAGACGGTGCTACTGATACATGCTGCGTTGCTATATGAAGCTGATACACTGCAGAGCTGTTGATGAAAGGGTCGcgacacattacacacactgttctactgtagtGAGTCTCAAATCACAccttattcccttcatagtgcactgctCGGCTCTGCTCAGACCTACTGCActgtaggggatagggtgtcgTTTGTAGAGCAGACAATGTTCCGTTTAGTTTTAGCTTTACAAATTGTGTTTCTCAATACAACTTTCCATGATAATGTACATTCGTTTAATGTTAGTTTTTAAAGCTATGAGCATTAACAAGGCCTGGAAAAAGGTGTTGACTTTTTATTTCGATGCTCTAGAAATATTCCATCTGTGATTCTATCTATGATGACATACTTCAGGTTTACGCCATATTATCCACTAGATAGCTGCTGTTTCCGGAGTAGCCCATCGAATGGACACTTAGAAACGTATCATCCAGACTAGCAAAGGACCAGCAAGAGATTTGTCATGTGTCCAACGTCCGTCCTCATCTTCTTCTGTCTTGCAACTTCAATGAAGTTAATTATTTAACTGTTCATGATACCCCTATATCCCTCGTTTAGCCTTTTGACCAGATTGGCTATAGGAACTGATCATAGGACTGACCTCTACTGTCTGCAGCTACTGACTCAATGTTACTACCGCTACTGTCAAAAACTACTGTTTGTGTGCAAGTGATAATAAGGTATGTCGTTTTGAGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTATGGATGAAATACAGGACTTTGATCTCTAGATACAGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACAATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTGTGCTGATGAAATGTATATCTGTGCTGTTTGATCATGACTACTTGAATTACATTTGGTGGAAATACATAACGAGCAACGTTGTAATACTTTCAGATGTTTATTGAATAAATACTGGCAGATGTATGActcatcatgctgtgtggtaactTGATGAAATAGAAGGGTACGATTGGCCTATGTCATGGACCAATAGGAATCAATAAAGCATGAATTGGATTGAATTCCGGGCAAACGGC
>TU762313
GTAGCTGATTGCCTTTCTACCATTGTAGGGGGTGTACTGGTGTTTGATAGGTTTTTACCAATGATGTAtgtaaaccctggattgctaatgctatgtattggccaatgagatgCTTTGAAgtcaccggtcggccatattggctctCCTCAGAAAAGCAGTCCtctaggaatgaatggaattctacagtatttcattgAAATgcttcaaggacaaaattacatgtatttaagtattttttgtTATAGTGGGAACAGTAATATCAGtacttaattttttaaatttttttaaattctatatatttttttgtatgtttAGTTCAcacaatataatttaaaagtatgcttTAAGTTGTCTGTAAAagaataaatgtggcaaaaacaAATATAGACatttataaatgcatttctatatctTCCTAGGTAATTTTTTTTACACTGGTGGGGGAGTACCAAGATGGAGGCGCGGTGGCTTCAAAACAGTGCccctttatcagtcatctagtgtatatagaAAGCATAGTGGTTTTTCATGGTATTTTTCATTGTAGTTCATAGATTTCGGCACCAGACGGTGCTACTGATACATGCTGCGTTGCTATATGAAGCTGATACACTGCAGAGCTGTTGATGAAAGGGTCGcgacacattacacacactgttctactgtagtGAGTCTCAAATCACAccttattcccttcatagtgcactgctCGGCTCTGCTCAGACCTACTGCActgtaggggatagggtgtcgTTTGTAGAGCAGACAATGTTCCGTTTAGTTTTAGCTTTACAAATTGTGTTTCTCAATACAACTTTCCATGATAATGTACATTCGTTTAATGTTAGTTTTTAAAGCTATGAGCATTAACAAGGCCTGGAAAAAGGTGTTGACTTTTTATTTCGATGCTCTAGAAATATTCCATCTGTGATTCTATCTATGATGACATACTTCAGGTTTACGCCATATTATCCACTAGATAGCTGCTGTTTCCGGAGTAGCCCATCGAATGGACACTTAGAAACGTATCATCCAGACTAGCAAAGGACCAGCAAGAGATTTGTCATGTGTCCAACGTCCGTCCTCATCTTCTTCTGTCTTGCAACTTCAATGAAGTTAATTATTTAACTGTTCATGATACCCCTATATCCCTCGTTTAGCCTTTTGACCAGATTGGCTATAGGAACTGATCATAGGACTGACCTCTACTGTCTGCAGCTACTGACTCAATGTTACTACCGCTACTGTCAAAAACTACTGTTTGTGTGCAAGTGATAATAAGGTATGTCGTTTTGAGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTATGGATGAAATACAGGACTTTGATCTCTAGATACAGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTGATACAGGTGAAATACAGGACAATGATCTATAAGGGTGAAATACAGGACAATGATCTATACGGGTGAAATACAGGACAATGATCTATAAGGGTGAAATAGAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAAGGATGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTGTGCTGATGAAATGTATATCTGTGCTGTTTGATCATGACTACTTGAATTACATTTGGTGGAAATACATAACGAGCAACGTTGTAATACTTTCAGATGTTTATTGAATAAATACTGGCAGATGTATGActcatcatgctgtgtggtaactTGATGAAATAGAAGGGTACGATTGGCCTATGTCATGGACCAATAGGAATCAATAAAGCATGAATTGGATTGAATTCCGGGCAAACGGC
>TU762314
GTAGCTGATTGCCTTTCTACCATTGTAGGGGGTGTACTGGTGTTTGATAGGTTTTTACCAATGATGTAtgtaaaccctggattgctaatgctatgtattggccaatgagatgCTTTGAAgtcaccggtcggccatattggctctCCTCAGAAAAGCAGTCCtctaggaatgaatggaattctacagtatttcattgAAATgcttcaaggacaaaattacatgtatttaagtattttttgtTATAGTGGGAACAGTAATATCAGtacttaattttttaaatttttttaaattctatatatttttttgtatgtttAGTTCAcacaatataatttaaaagtatgcttTAAGTTGTCTGTAAAagaataaatgtggcaaaaacaAATATAGACatttataaatgcatttctatatctTCCTAGGTAATTTTTTTTACACTGGTGGGGGAGTACCAAGATGGAGGCGCGGTGGCTTCAAAACAGTGCccctttatcagtcatctagtgtatatagaAAGCATAGTGGTTTTTCATGGTATTTTTCATTGTAGTTCATAGATTTCGGCACCAGACGGTGCTACTGATACATGCTGCGTTGCTATATGAAGCTGATACACTGCAGAGCTGTTGATGAAAGGGTCGcgacacattacacacactgttctactgtagtGAGTCTCAAATCACAccttattcccttcatagtgcactgctCGGCTCTGCTCAGACCTACTGCActgtaggggatagggtgtcgTTTGTAGAGCAGACAATGTTCCGTTTAGTTTTAGCTTTACAAATTGTGTTTCTCAATACAACTTTCCATGATAATGTACATTCGTTTAATGTTAGTTTTTAAAGCTATGAGCATTAACAAGGCCTGGAAAAAGGTGTTGACTTTTTATTTCGATGCTCTAGAAATATTCCATCTGTGATTCTATCTATGATGACATACTTCAGGTTTACGCCATATTATCCACTAGATAGCTGCTGTTTCCGGAGTAGCCCATCGAATGGACACTTAGAAACGTATCATCCAGACTAGCAAAGGACCAGCAAGAGATTTGTCATGTGTCCAACGTCCGTCCTCATCTTCTTCTGTCTTGCAACTTCAATGAAGTTAATTATTTAACTGTTCATGATACCCCTATATCCCTCGTTTAGCCTTTTGACCAGATTGGCTATAGGAACTGATCATAGGACTGACCTCTACTGTCTGCAGCTACTGACTCAATGTTACTACCGCTACTGTCAAAAACTACTGTTTGTGTGCAAGTGATAATAAGGTATGTCGTTTTGAGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTGATACAGGTGAAATACAGGACAATGATCTATAAGGGTGAAATACAGGACAATGATCTATACGGGTGAAATACAGGACAATGATCTATAAGGGTGAAATAGAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAAGGATGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACAATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTGTGCTGATGAAATGTATATCTGTGCTGTTTGATCATGACTACTTGAATTACATTTGGTGGAAATACATAACGAGCAACGTTGTAATACTTTCAGATGTTTATTGAATAAATACTGGCAGATGTATGActcatcatgctgtgtggtaactTGATGAAATAGAAGGGTACGATTGGCCTATGTCATGGACCAATAGGAATCAATAAAGCATGAATTGGATTGAATTCCGGGCAAACGGC
>TU762315
GTAGCTGATTGCCTTTCTACCATTGTAGGGGGTGTACTGGTGTTTGATAGGTTTTTACCAATGATGTAtgtaaaccctggattgctaatgctatgtattggccaatgagatgCTTTGAAgtcaccggtcggccatattggctctCCTCAGAAAAGCAGTCCtctaggaatgaatggaattctacagtatttcattgAAATgcttcaaggacaaaattacatgtatttaagtattttttgtTATAGTGGGAACAGTAATATCAGtacttaattttttaaatttttttaaattctatatatttttttgtatgtttAGTTCAcacaatataatttaaaagtatgcttTAAGTTGTCTGTAAAagaataaatgtggcaaaaacaAATATAGACatttataaatgcatttctatatctTCCTAGGTAATTTTTTTTACACTGGTGGGGGAGTACCAAGATGGAGGCGCGGTGGCTTCAAAACAGTGCccctttatcagtcatctagtgtatatagaAAGCATAGTGGTTTTTCATGGTATTTTTCATTGTAGTTCATAGATTTCGGCACCAGACGGTGCTACTGATACATGCTGCGTTGCTATATGAAGCTGATACACTGCAGAGCTGTTGATGAAAGGGTCGcgacacattacacacactgttctactgtagtGAGTCTCAAATCACAccttattcccttcatagtgcactgctCGGCTCTGCTCAGACCTACTGCActgtaggggatagggtgtcgTTTGTAGAGCAGACAATGTTCCGTTTAGTTTTAGCTTTACAAATTGTGTTTCTCAATACAACTTTCCATGATAATGTACATTCGTTTAATGTTAGTTTTTAAAGCTATGAGCATTAACAAGGCCTGGAAAAAGGTGTTGACTTTTTATTTCGATGCTCTAGAAATATTCCATCTGTGATTCTATCTATGATGACATACTTCAGGTTTACGCCATATTATCCACTAGATAGCTGCTGTTTCCGGAGTAGCCCATCGAATGGACACTTAGAAACGTATCATCCAGACTAGCAAAGGACCAGCAAGAGATTTGTCATGTGTCCAACGTCCGTCCTCATCTTCTTCTGTCTTGCAACTTCAATGAAGTTAATTATTTAACTGTTCATGATACCCCTATATCCCTCGTTTAGCCTTTTGACCAGATTGGCTATAGGAACTGATCATAGGACTGACCTCTACTGTCTGCAGCTACTGACTCAATGTTACTACCGCTACTGTCAAAAACTACTGTTTGTGTGCAAGTGATAATAAGGTATGTCGTTTTGAGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTGATACAGGTGAAATACAGGACAATGATCTATAAGGGTGAAATACAGGACAATGATCTATACGGGTGAAATACAGGACAATGATCTATAAGGGTGAAATAGAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTATAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAGATACAGGTGAAATACAGGACAATGATCTCTAGATACAGGTGAAATACAGGACTATGATCTCTAATGGTGAAATACAGGACTATGATCTCTAAGGGTGAAATACAGGACTATGATCTGTGCTGATGAAATGTATATCTGTGCTGTTTGATCATGACTACTTGAATTACATTTGGTGGAAATACATAACGAGCAACGTTGTAATACTTTCAGATGTTTATTGAATAAATACTGGCAGATGTATGActcatcatgctgtgtggtaactTGATGAAATAGAAGGGTACGATTGGCCTATGTCATGGACCAATAGGAATCAATAAAGCATGAATTGGATTGAATTCCGGGCAAACGGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU762309 False 2302 lncRNA 0.38 3 7253783 7256196
TU762312 False 1947 lncRNA 0.38 2 7253783 7256196
TU762313 False 2166 lncRNA 0.37 3 7253783 7256196
TU762314 False 2206 lncRNA 0.38 3 7253783 7256196
TU762315 True 2122 lncRNA 0.38 4 7253783 7256196

Neighbor

gene id symbol gene type direction distance location
sipa1l1 LOC106571085 coding downstream 19258 7000285 ~ 7234525 (-)
LOC110529169 LOC106571069 coding downstream 287532 6855891 ~ 6966251 (-)
wdr21 dcaf4 coding downstream 451880 6786377 ~ 6801903 (-)
LOC118965487 NA coding downstream 492239 6759400 ~ 6761807 (-)
LOC110529288 LOC106571062 coding downstream 536000 6695982 ~ 6717783 (-)
LOC110529175 LOC106571087 coding upstream 721 7256917 ~ 7287390 (-)
LOC110529304 LOC106608157 coding upstream 84503 7340699 ~ 7369522 (-)
LOC110529302 LOC106571090 coding upstream 144711 7400907 ~ 7423688 (-)
susd6 LOC106571091 coding upstream 162135 7418331 ~ 7480048 (-)
LOC118965488 NA coding upstream 411551 7667747 ~ 7670221 (-)
G668981 NA non-coding downstream 68990 6687715 ~ 7184793 (-)
G669180 NA non-coding downstream 117454 7134033 ~ 7136329 (-)
G669166 NA non-coding downstream 148514 7104970 ~ 7105269 (-)
G669139 NA non-coding downstream 204050 7049423 ~ 7049733 (-)
G669087 NA non-coding downstream 262171 6989850 ~ 6991612 (-)
G669240 NA non-coding upstream 6691 7262887 ~ 7263148 (-)
G669270 NA non-coding upstream 47740 7303936 ~ 7304795 (-)
G669229 NA non-coding upstream 69354 7325550 ~ 7334714 (-)
G669251 NA non-coding upstream 90747 7346943 ~ 7350739 (-)
G669285 NA non-coding upstream 95491 7351687 ~ 7355081 (-)
G668192 NA other downstream 969762 6206558 ~ 6284021 (-)
G668238 NA other downstream 972143 6280196 ~ 6281640 (-)
znf395b LOC106571047 other downstream 1702538 5535756 ~ 5551550 (-)
G669278 NA other upstream 61108 7317304 ~ 7320203 (-)
G669281 NA other upstream 159829 7416025 ~ 7418235 (-)
G669918 NA other upstream 851675 8107871 ~ 8110958 (-)

Expression

G669230 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G669230 Expression in each Bioproject

Bar chart with 17 bars.
G669230 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network