XLOC_002599 (plpp1a)


Basic Information

Item Value
gene id XLOC_002599
gene name plpp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8265972 ~ 8295342 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004839
ACTCCTTTTAATCCCGTCGCCAGAAACACCGCACACCGGCTCGTCATCACTTATTCTTAACCTCATGCGCTGAAATGGTCATCATATCCAAGGAACTAAGACCCAACAGCCCGTTCTTTCTGCTATCCGGCTGATTATTAGTCGCCATTACGCGGTCAATGTTATTAAGCGCGCTTAGACTCGCGTTAGTGCGCGCCCCTGCAGCTCATTTCTCTATAACTAAACCGCTAGAAGTGTTTACAGTCAGTCTTTTTACAGAGAAGACACCGAGGACGCCttaaaaaaaagcctttaatTTCAAAAGTGACGCACGGAAGGACACTGATAAGATGTTTGAAACCAGAGGAATCCCTTTTATATTGCTTGACATCGCGTGCCTAATACTTGCTGATCTCCCGCTTGCAGCGTTTAACCTGGGTAAAATCAAACCGTATCAGCGGGGCTTTTTCTGTAATGATGAAAGCATCCGCTACCCTTTCCACAGCAGCACCGTCACCTCCACTGTGCTCTACACAGTGGGCTTCACACTTCCCATATGTAGTATGATCATAGGCGAGTGCCTTTCAGTATACCTAAACCGCATCAAATCAAACTCTTTCTGCAACGGTTATGTGGCCTGTGTCTATAAGGCCATTGGCACTTTTGTGTTTGGTGCCGCCATAAGCCAATCACTCACTGACATTGCCAAGTATTCCATTGGCCGACTGCGGCCGCACTTCCTGGATGTGTGCAAACCAGATTGGTCGAAGATCAACTGCACTGCAGGGGCTTACATTGAAGACTTTGTCTGCACTGGGAAAGAAAGCGTGGTCAATGAGGGGCGactttcATTCTATTCAGGCCACTCCTCGTTCTCCATGTACTGCATGTTGTTCCTGGCACTTTACCTTCAAGCAAGAATGCAAGCTGAATGGGCACGGCTCCTTCGCCCCACACTCCAGTTCTTCCTGATTGCTGCTTCTGTGTATACCGGTCTGTCCCGTGTGTCAGACTACAAACACCACTGGAGTGACGTGCTCACAGGCCTCATCCAAGGAGCCATCGTGGCTTTACTAGTGGTTTTCTTTGTGTCAGACTTCTTCAAAAAGAAAGTGGAACCACAGAAAGAGACAGAGATCCCGCACACCACCTTACAAGAAACACCCACAAATGGAAATCATTACGATAACCCGAACTAAGCTTTGAGGAACCTCCACTGATGGGATGGGATTTCGGCTTGCAACCCACTATGAGGCCAGACCACTAGGGTGGAAACCTGTGAATGTAACCTTGCTTTCAATGTTCTCCAGATCCCGTTCTCGGGGTCTCTTTATGGACGCTGTTCCACATTGCCTTGGCTGGACTGCTTCTGCTGCTACAACAGCTTCCTGTGTATCTCTGAAAACTAATATAAACGTACCTCTATTAAACCACACCACAGAAGCAATTTTTTATCTGTATGAAGAAAAACAATAtacagacttttttttattaaaattgttaaaattgtatGTACAATAATGTTGCGCTTTTATGACGAAAACAAAAATCCATTATGCTCGTTGacgaacacaaataaaacaattatgttccaTGTC
>TCONS_00004840
GTGTTTACAGAGTTGCCAAACAAATCCCAGCTCTGATTTTAGGGTTGCACAGACACGCGTCGACACGCAATGGTAGTTAAACAGACCTTGTTTTGCCTGCAAACCATCGTTCTACTCGGGTCATTCTATCAAACCTCTAAATGAGTAATGATTTTGACAACAAGACCTGTAACGCAATAGCATAATGATTAATATTTAAGCATAATCTAGAGACAGACTGTTGGCCAACTAAACTCAAGTTGGTTCCTGCTGAAGGAAGTGTTTCCTATGAGTAGGTGGTGTGGTTGACTCAGATTTGATGCGTCATGCCAGAATTTTAGAGTTGAGTTAGCTAGAATAATAAATGAGGCACTGCTTAATCAGCAATGCTTGGTAGAACGGGAACCGGAAAAACGTGAATATACTACAATGGTGATGATCATGTGCATTAACACCTTTCTCTTTGTCAAAGCTTTACCTTCAAGCAAGAATGCAAGCTGAATGGGCACGGCTCCTTCGCCCCACACTCCAGTTCTTCCTGATTGCTGCTTCTGTGTATACCGGTCTGTCCCGTGTGTCAGACTACAAACACCACTGGAGTGACGTGCTCACAGGCCTCATCCAAGGAGCCATCGTGGCTTTACTAGTGGTTTTCTTTGTGTCAGACTTCTTCAAAAAGAAAGTGGAACCACAGAAAGAGACAGAGATCCCGCACACCACCTTACAAGAAACACCCACAAATGGAAATCATTACGATAACCCGAACTAAGCTTTGAGGAACCTCCACTGATGGGATGGGATTTCGGCTTGCAACCCACTATGAGGCCAGACCACTAGGGTGGAAACCTGTGAATGTAACCTTGCTTTCA
>TCONS_00004841
ATGCAGTTGTATTGGGGAAAATACAGCACTCTGTTAacctttgttttgtttctctcACTGCTTTTTTTGCTAGTTGGACTCCCATTTGCAATACTCACAATACAACACAAATCATTCAAACGTGGATTTTTCTGTAACGATGACTCGATCAAGTACCCATATAAAGAGGACACCATATCCTATCAGTTATTAGGAGGAGTTATGATCCCTGTCACTTTGCTTACTATGATCATAGGCGAGTGCCTTTCAGTATACCTAAACCGCATCAAATCAAACTCTTTCTGCAACGGTTATGTGGCCTGTGTCTATAAGGCCATTGGCACTTTTGTGTTTGGTGCCGCCATAAGCCAATCACTCACTGACATTGCCAAGTATTCCATTGGCCGACTGCGGCCGCACTTCCTGGATGTGTGCAAACCAGATTGGTCGAAGATCAACTGCACTGCAGGGGCTTACATTGAAGACTTTGTCTGCACTGGGAAAGAAAGCGTGGTCAATGAGGGGCGactttcATTCTATTCAGGCCACTCCTCGTTCTCCATGTACTGCATGTTGTTCCTGGCACTTTACCTTCAAGCAAGAATGCAAGCTGAATGGGCACGGCTCCTTCGCCCCACACTCCAGTTCTTCCTGATTGCTGCTTCTGTGTATACCGGTCTGTCCCGTGTGTCAGACTACAAACACCACTGGAGTGACGTGCTCACAGGCCTCATCCAAGGAGCCATCGTGGCTTTACTAGTGGTTTTCTTTGTGTCAGACTTCTTCAAAAAGAAAGTGGAACCACAGAAAGAGACAGAGATCCCGCACACCACCTTACAAGAAACACCCACAAATGGAAATCATTACGATAACCCGAACTAA
>TCONS_00004842
ATGTTTGAAACCAGAGGAATCCCTTTTATATTGCTTGACATCGCGTGCCTAATACTTGTTGGACTCCCATTTGCAATACTCACAATACAACACAAATCATTCAAACGTGGATTTTTCTGTAACGATGACTCGATCAAGTACCCATATAAAGAGGACACCATATCCTATCAGTTATTAGGAGGAGTTATGATCCCTGTCACTTTGCTTACTATGATCATAGGCGAGTGCCTTTCAGTATACCTAAACCGCATCAAATCAAACTCTTTCTGCAACGGTTATGTGGCCTGTGTCTATAAGGCCATTGGCACTTTTGTGTTTGGTGCCGCCATAAGCCAATCACTCACTGACATTGCCAAGTATTCCATTGGCCGACTGCGGCCGCACTTCCTGGATGTGTGCAAACCAGATTGGTCGAAGATCAACTGCACTGCAGGGGCTTACATTGAAGACTTTGTCTGCACTGGGAAAGAAAGCGTGGTCAATGAGGGGCGactttcATTCTATTCAGGCCACTCCTCGTTCTCCATGTACTGCATGTTGTTCCTGGCACTTTACCTTCAAGCAAGAATGCAAGCTGAATGGGCACGGCTCCTTCGCCCCACACTCCAGTTCTTCCTGATTGCTGCTTCTGTGTATACCGGTCTGTCCCGTGTGTCAGACTACAAACACCACTGGAGTGACGTGCTCACAGGCCTCATCCAAGGAGCCATCGTGGCTTTACTAGTGGTTTTCTTTGTGTCAGACTTCTTCAAAAAGAAAGTGGAACCACAGAAAGAGACAGAGATCCCGCACACCACCTTACAAGAAACACCCACAAATGGAAATCATTACGATAACCCGAACTAA
>TCONS_00004843
AGATAGCAGGAGCAGAAGCTCCGGAGGTGTGGAGCCACAAGACACCCGACTCCTTTTAATCCCGTCGCCAGAAACACCGCACACCGGCTCGTCATCACTTATTCTTAACCTCATGCGCTGAAATGGTCATCATATCCAAGGAACTAAGACCCAACAGCCCGTTCTTTCTGCTATCCGGCTGATTATTAGTCGCCATTACGCGGTCAATGTTATTAAGCGCGCTTAGACTCGCGTTAGTGCGCGCCCCTGCAGCTCATTTCTCTATAACTAAACCGCTAGAAGTGTTTACAGTCAGTCTTTTTACAGAGAAGACACCGAGGACGCCttaaaaaaaagcctttaatTTCAAAAGTGACGCACGGAAGGACACTGATAAGATGTTTGAAACCAGAGGAATCCCTTTTATATTGCTTGACATCGCGTGCCTAATACTTGTTGGACTCCCATTTGCAATACTCACAATACAACACAAATCATTCAAACGTGGATTTTTCTGTAACGATGACTCGATCAAGTACCCATATAAAGAGGACACCATATCCTATCAGTTATTAGGAGGAGTTATGATCCCTGTCACTTTGCTTACTATGATCATAGGCGAGTGCCTTTCAGTATACCTAAACCGCATCAAATCAAACTCTTTCTGCAACGGTTATGTGGCCTGTGTCTATAAGGCCATTGGCACTTTTGTGTTTGGTGCCGCCATAAGCCAATCACTCACTGACATTGCCAAGTATTCCATTGGCCGACTGCGGCCGCACTTCCTGGATGTGTGCAAACCAGATTGGTCGAAGATCAACTGCACTGCAGGGGCTTACATTGAAGACTTTGTCTGCACTGGGAAAGAAAGCGTGGTCAATGAGGGGCGactttcATTCTATTCAGGCCACTCCTCGTTCTCCATGTACTGCATGTTGTTCCTGGCA

Function

symbol description
plpp1a Predicted to enable diacylglycerol diphosphate phosphatase activity and phosphatidate phosphatase activity. Predicted to act upstream of or within phospholipid metabolic process. Predicted to be located in apical plasma membrane and caveola. Predicted to be integral component of membrane. Is expressed in mesoderm; notochord; solid lens vesicle; somite; and vasculature. Orthologous to human PLPP1 (phospholipid phosphatase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006644 phospholipid metabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-26 Predicted to enable diacylglycerol diphosphate phosphatase activity and phosphatidate phosphatase activity. Predicted to act upstream of or within phospholipid metabolic process. Predicted to be located in apical plasma membrane and caveola. Predicted to be integral component of membrane. Is expressed in mesoderm; notochord; solid lens vesicle; somite; and vasculature. Orthologous to human PLPP1 (phospholipid phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000053381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004839 False 1577 mRNA 0.46 6 8265972 8295294
TCONS_00004840 False 848 lncRNA 0.44 2 8266271 8269833
TCONS_00004841 False 861 mRNA 0.46 5 8266371 8282815
TCONS_00004842 False 846 mRNA 0.46 6 8266371 8294965
TCONS_00004843 True 926 mRNA 0.46 4 8274075 8295342

Neighbor

gene id symbol gene type direction distance location
XLOC_002598 dhx29 coding downstream 68923 8154874 ~ 8197049 (-)
XLOC_002597 CU633857.1 coding downstream 112929 8146348 ~ 8153043 (-)
XLOC_002596 ndufa9b coding downstream 136516 8128374 ~ 8129456 (-)
XLOC_002595 si:ch211-251f6.6 coding downstream 186142 8058850 ~ 8079830 (-)
XLOC_002594 si:ch211-251f6.7 coding downstream 212219 8051616 ~ 8053753 (-)
XLOC_002600 csgalnact1a coding upstream 3642 8298984 ~ 8358396 (-)
XLOC_002601 tctn1 coding upstream 120775 8416117 ~ 8434816 (-)
XLOC_002602 NA coding upstream 323376 8618718 ~ 8621543 (-)
XLOC_002603 NA coding upstream 343579 8638921 ~ 8657677 (-)
XLOC_002604 GOLPH3 coding upstream 365312 8660654 ~ 8672820 (-)
XLOC_002590 NA non-coding downstream 282228 7981119 ~ 7983744 (-)
XLOC_002585 BX294661.1 non-coding downstream 373288 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding downstream 379932 7883753 ~ 7886040 (-)
XLOC_002575 BX537303.2 non-coding downstream 753849 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 1012074 7238244 ~ 7253898 (-)
XLOC_002605 BX571955.1 non-coding upstream 380548 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 546356 8841698 ~ 8858568 (-)
XLOC_002609 CU694950.1 non-coding upstream 721379 9016721 ~ 9016837 (-)

Expression


Co-expression Network