XLOC_000026


Basic Information

Item Value
gene id XLOC_000026
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 794976 ~ 911551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003005
CTTAAGCCCAAAATGGAGTCATTTTGGATTCACACTACAAACGGAGTTGGTGTGTGGTTGCTTTTGGCTTTGTACGGGGGAGATGCTCTGAAacggacacacaaacacaagGAGCTCAGTGTGTGGAGGCTTACAGAAACGGCAGACCAAAAGTGTGGTGaaactcagattttttttctctctgtcatCCTGCAACCCGACTCCTCTGCCTGCGCTGGTGTGAAAACAGTAAAGGAGCAGATCTGGGCTTGACGTCATCAGGATTTTCCCTGGAGGTTTGAGGGTCTTTATTCTCTGTATCTGCTGCGTCAGAACGAAGTTTCAGCACTGCAGACGCTCTGGCTGTAACTTTATCTGACGGTAAACCCTGACCAGCTCCTGTCTGTTCGTATAATGACCACAGACTCTCTGATTTACTGTGGTCAAACAGGCCAATGCACAGACCAAGCATTCACACAACAAAAACAGCTCACTCACAGGATTTATGACACAAAACTATTGGAGATCAAAAACTGGGAATGCTGAGACTTTCTAGATCAGATGCTGTCAGATGGAGGGTCACGACCTCTCAAAGAGTTTCAAAGagcctgtttgtttatttattagtgctaattaacccttgtgtgaatgctgggatgttttcatccactctggggtgttTTTGAAGCTTCATTTGGCCACAGCttcctctgtgtttcagcaaatggaaggATTATTTTGTGCCAactcttattttgaaatatattttgggaaaatgctttggaataaaaaaaaaaaaaaag
>TCONS_00003006
CTTAAGCCCAAAATGGAGTCATTTTGGATTCACACTACAAACGGAGTTGGTGTGTGGTTGCTTTTGGCTTTGTACGGGGGAGATGCTCTGAAacggacacacaaacacaagGAGCTCAGTGTGTGGAGGCTTACAGAAACGGCAGACCAAAAGTGTGGTGaaactcagattttttttctctctgtcatCCTGCAACCCGACTCCTCTGCCTGCGCTGGTGTGAAAACAGTAAAGGAGCAGATCTGGGCTTGACGTCATCAGGATTTTCCCTGGAGTCCTGCAGGTGTCCACCCAGCGGAGgcttttaacagagagaagagctGCAGATCCACAGCTGTTCAGAGAAACGCTCACCTGTAATCAGGACTCATCCAGCTGTTTCTGCAGTCTGACGGCATTGACATCTTTTCCAAATGCGAGTTCTGGATGTCTGTATGAATTTCTCAGTGTGAATCTGGCCTTGCAGTGAACCAATACCAGTCAAGTTCACCCCCACATGTGGGATTGCAGTGAATCTGAGCTCTGCTTTAGTCATAATGTTCATGAAAGAGAGAAACGCCCACCGTCTGATGGCTTTACAATGTGACAAAAAACAGGACAGCTTCAGATTTCATCCGCATTGCACCCTCAGAAGCTCCTGAAATCATGGACCGTCATCTAAACACTGCTCTGGCAAGAGAAACACTAAACCTATGAAagaaatgtatacttttattCTCACATTGGATTTATTGAAACTGACAGGAAAGACATTTAAAATGCTACAAAAAATATTCGATTTCAGATAAATGCTCAATTGAAGCTTCTACTCAACTGTGAGTCATGAAAATTAAAATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003005 False 782 lncRNA 0.43 2 794976 898180
TCONS_00003006 True 838 lncRNA 0.44 5 794976 911551

Neighbor

gene id symbol gene type direction distance location
XLOC_000025 jam2a coding upstream 186729 594584 ~ 608247 (+)
XLOC_000023 mrpl39 coding upstream 203645 532766 ~ 591331 (+)
XLOC_000024 dre-mir-155 coding upstream 218455 576444 ~ 576521 (+)
XLOC_000022 mrpl16 coding upstream 262547 524388 ~ 532429 (+)
XLOC_000021 txnl4b coding upstream 276900 513986 ~ 518076 (+)
XLOC_000027 n6amt1 coding downstream 50056 961607 ~ 970951 (+)
XLOC_000028 NA coding downstream 104261 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 coding downstream 307140 1218691 ~ 1218805 (+)
XLOC_000030 NA coding downstream 403738 1315289 ~ 1342237 (+)
XLOC_000031 NA coding downstream 447180 1358731 ~ 1360831 (+)
XLOC_000018 NA non-coding upstream 436414 355481 ~ 358562 (+)
XLOC_000011 NA non-coding upstream 637694 156792 ~ 157282 (+)
XLOC_000032 NA non-coding downstream 660296 1571847 ~ 1578251 (+)

Expression


Co-expression Network