G670733 (LOC107575789)


Basic Information

Item Value
gene id G670733
gene name LOC107575789
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 8949694 ~ 8961731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU764089
attttttgaacattttgtaaatgtattaaaaataaaacagaaatagcttatttacataagtattcagaccctttgctattagactcagaattgagctcagatgtatcctgttaccattgatcatccttgagatgtttctataacttcaTTGGAGTTCGcttgtgttaaattcaattgattggacataatttggaaaggcacacaactgtctatataaaggtcccacagttgacagtgcatgtcagagtaaaaaacaagccatgaggtcgaaggaattgcccatagatctggggaagggttccaaaacatttcagcagcattgaaggtccccaaaaaacacagtggcctccatcattattaaatggaagaagtttagaaccaccaagattgtttttagagctggccgcccggccaaactgatcaatcgctggaaaagggccttggtcagggaggtgactctgAATTTCGCTCTTGAGTTCATCTAGCTTGCAAACAAAACTACtccagctacaatacctcttttgccaattggcctggaccctttgttgACACGGAGCCCAGCCGATaaatcacgactggtctgccgacgtaatccCGTACattgtgccttcaaccggcctctgCCGGACGTCGTTGAAGACGCTTCTGCTACCGGTctgcatcctgactggttgcatcactgcctggtacggaaattgctcggcctctgactgcaaggcactacagagggtagtgcgtacggcccagtacatcactggggctaagctgcctgccacccaggacctctacaccaggtgatgtcagaggaatgccctgaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactactgcatggcaagcggtactggagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagccataagacacctgaacaggtaatcaaatggctacccggactatttccccaacccctctttttacgctgctgctactctctgttgatcatatatgtatagtcactaactatacattcatgtacatactacctcaattgagCCAacaaaccagtgctcccgcacactggctaaccgggctatctgcattgtgtgccacccacctcccgccaacccctcttttacgccactgctcctctctgttcatcatatacagtgagggaaaaaagtatttgatcccctgctgattttgtgcGTTTgcccactttaaaaaaaaatccataaaaacgcctgtcaaaaatgttattacttgatttgcattttaattagggaaataagtatttgacccttCTGCAAAACAtaacttagtacttggtggcaaaacccttgtggcaatcacagaggtcagacgtttcttgtagttttccaccaggtttgcacacatctcggaagggattttgtcccactcctctttgcagatcttctccaagtcattaaggttttgaggctgacgtttggcaactcgaaccttcagctcccttcacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaacaCCTCTTGATATTCCCAAaaccgcatgcgggagcgtaatcatcgcctgacaataattagcataacgcaacggacataaatgtccctagaaaatattcctattcatgaaaatcacaaattaaatatattgagacacagtttagccttttgttaatcaccctgtcatctcagattttcaaaatatgccttacagccaaagctagacaagcatttgtgtaagtttatcgatagcctagcatcgcattatgccttgctagcagcaggcaaccttgtcacgaaatcagaaaaacaatcaaattaaatcgtttacctttgatgaacttcagatgttttcactcacgagactcccaggtagatagccaaagttcattttttcccaaaatattatttttgtaggcgaaacagCTCCATTTGtttttcacgtttggctgagaaatcgcccgggaattgcggtcaccacaacgccgaaaaatattccaaattagctccgtaatatcgacagaaacatggcaaacgttgtttagaatccattctcaaggtgtttttctaatatctattcgataatatatccgtcgggacaattcgtttttcaataggaccgattggagtaatggctacctctgtattttacgcaagaatctctctcggagccaccatgtgaccacttactcAATGTGGCCGCCTaaggctattcttcaacagaaatgcgtaaaactacgtcacaatgctgtagacaccttggggaatacgtagaaagcataagctcgttgatggtacattcacagccaaatatgtttccacctccatgtttgacggtggggatggtgttcttggggtcatagacagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcacccagttgtcctctgaatcattcagatgttaattggcaaacttcagatgggcatgtatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgcaactccacaaggtgagatcttgcatggagccccaggccgagggagattgacagttcttttgtgtttcttccatttgcgaacaatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagctttgtgtaggtctacaatcttgtccctgacatccttggaGTGCTCTTTG
>TU764088
attttttgaacattttgtaaatgtattaaaaataaaacagaaatagcttatttacataagtattcagaccctttgctattagactcagaattgagctcagatgtatcctgttaccattgatcatccttgagatgtttctataacttcaTTGGAGTTCGcttgtgttaaattcaattgattggacataatttggaaaggcacacaactgtctatataaaggtcccacagttgacagtgcatgtcagagtaaaaaacaagccatgaggtcgaaggaattgcccatagatctggggaagggttccaaaacatttcagcagcattgaaggtccccaaaaaacacagtggcctccatcattattaaatggaagaagtttagaaccaccaagattgtttttagagctggccgcccggccaaactgatcaatcgctggaaaagggccttggtcagggaggtgactctgAATTTCGCTCTTGAGTTCATCTAGCTTGCAAACAAAACTACtccagctacaatacctcttttgccaattggcctggaccctttgttgACACGGAGCCCAGCCGATaaatcacgactggtctgccgacgtaatccCGTACattgtgccttcaaccggcctctgCCGGACGTCGTTGAAGACGCTTCTGCTACCGGTctgcatcctgactggttgcatcactgcctggtacggaaattgctcggcctctgactgcaaggcactacagagggtagtgcgtacggcccagtacatcactggggctaagctgcctgccacccaggacctctacaccaggtgatgtcagaggaatgccctgaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactactgcatggcaagcggtactggagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagccataagacacctgaacaggtaatcaaatggctacccggactatttccccaacccctctttttacgctgctgctactctctgttgatcatatatgtatagtcactaactatacattcatgtacatactacctcaattgagCCAacaaaccagtgctcccgcacactggctaaccgggctatctgcattgtgtgccacccacctcccgccaacccctcttttacgccactgctcctctctgttcatcatatacagtgagggaaaaaagtatttgatcccctgctgattttgtgcGTTTgcccactttaaaaaaaaatccataaaaacgcctgtcaaaaatgttattacttgatttgcattttaattagggaaataagtatttgacccttCTGCAAAACAtaacttagtacttggtggcaaaacccttgtggcaatcacagaggtcagacgtttcttgtagttttccaccaggtttgcacacatctcggaagggattttgtcccactcctctttgcagatcttctccaagtcattaaggttttgaggctgacgtttggcaactcgaaccttcagctcccttcacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaacaCCTCTTGATATTCCCAAaaccgcatgcgggagcgtaatcatcgcctgacaataattagcataacgcaacggacataaatgtccctagaaaatattcctattcatgaaaatcacaaattaaatatattgagacacagtttagccttttgttaatcaccctgtcatctcagattttcaaaatatgccttacagccaaagctagacaagcatttgtgtaagtttatcgatagcctagcatcgcattatgccttgctagcagcaggcaaccttgtcacgaaatcagaaaaacaatcaaattaaatcgtttacctttgatgaacttcagatgttttcactcacgagactcccaggtagatagccaaagttcattttttcccaaaatattatttttgtaggcgaaacagCTCCATTTGtttttcacgtttggctgagaaatcgcccgggaattgcggtcaccacaacgccgaaaaatattccaaattagctccgtaatatcgacagaaacatggcaaacgttgtttagaatccattctcaaggtgtttttctaatatctattcgataatatatccgtcgggacaattcgtttttcaataggaccgattggagtaatggctacctctgtattttacgcaagaatctctctcggagccaccatgtgaccacttactcAATGTGGCCGCCTaaggctattcttcaacagaaatgcgtaaaactacgtcacaatgctgtagacaccttggggaatacgtagaaagcataagctcgttgatggtacattcacagccaaatatgtttccacctccatgtttgacggtggggatggtgttcttggggtcatagacagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcacccagttgtcctctgaatcattcagatgttaattggcaaacttcagatgggcatgtatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgcaactccacaaggtgagatcttgcatggagccccaggccgagggagattgacagttcttttgtgtttcttccatttgcgaacaatcgcaccaactgttgtcaccttctcaccaagctgcttggtgatggtcttgtagcccattccagctttgtgtaggtctacaatcttgtccctgacatccttggagtgCTCTTTTGTACAttttggccatggtggagagttggAATCTGATAGATTCACTctacaaaaaatccagaaaaacacatgtcaaaaattttataaatgtatttgcattttaatgagggaaataagtatttgacccactttcaatcagaaagatttctgtggacaggtgtcttttatacaggtaacaaacagattaggagcactccctttaggAGTTGCAATATACTGCAGAGAGAActttgacagaactttgcaggcgaTCATACGTTCCAGGTATATTTCCAAAAAGtttgagcttctaattttaaaaatgtatttctccagaaataagtctctcactgttgacgCCTGTTATAGactcccctcagctcccagctgtgccctggacaccatatgtggaTTGATtaccccccatttatcttcagagttcgttctgctaggtgacctaaattgggatatgcttaacaccccaaacgtcctacaatctaagctagatgccctcaatctcacacaaatgatcaaggaatcCACCAGGTACAaacctaaatctgtaaacatggacaccctcatagatattatcctgaccaacttcccctccaaatacacctctgctgttttcaatcaggatctcagcgatcactgcctcattgcctgcatccattatgggtccgtggtcaaacgaccacccctcatcactgtcaaacgctccctaaaacacttctgtttcacactttctaatcgacctggcccaggtatcctggaaggatattgacctcatcccattaGTAGAGggtgcctggttgttctttaaaagtagttttctcaccatcttaaataagcatgcccctttcaaaatgttttgaattaagaacagcccttggttcactccagacctgactgccctcgaccagcacaaaaacatcctgtggcgtacttcactagcatcgaatagtcccagcaatatgcaacttttcagggaagttaggaaccaatacacacagtcagttgggaaagcaaaggctagctttttcaaacagaaatttgcatcttgcATCTAACTCCAAAaagggacactgtaaagtccattgagaataagagcacctcctcccagttgcccacttcactgaggctaggaaacactgtcaccaccaaaaatccacgataattgagaatttcaataagcatttcttacggctggccatgcttccctcctggctaccccaaccccggccaacagctcaacaccccccgcagctacttgcccaagcctccccagatTCTCCTTCacacaaatccagatagcagatgttctgaaagagctgcaaaacctggacccgtacaaatcagctgggctagataatctggaccctctctttctaaaatcatCTGcctccattgttgcaacccctatcactAGTCTGTTTAATCTCTTctctgattctttgatccacctctacgcagacgacaccattctgtatacatctggcccttctttggacactgtgttaacaaacctccaaacgagcttcaatgccatacaactctccttccgtggccttcaactgctcttaaatacaagcaaaactaaatgtgtgctcttcaaccgatcgctgcccgcacctgccctccTGTCcaatatcactactctggacggctctgacttagaatactacaaatacctaggtgtctggctagactgtaaactccttccagactccaatccaaaatgaaatctagaatcgactACCTATTTTGCAGCagtctccttcactcatgctgccaaacataccctcgtaaaactgactatccttctgatcctcgacttcagcgatgtaatttacaaaatagccttcaacactctactcagcaaattggatgcagtccatcacagtgtcatccgttttgtcaccaaagccccatgtaccacccaccactacgacctgtatgctctcgtcggctggccctcgctacatatttgtcgccagacccactggctccaggtcatctataagtctttgctccgccttatctcagctcactggtcaccataacaacacccacccgcaacactcgctccagcaggtatatctcaccggtcaaccccaaagccaacaccttcttcggacgcctttccttccagttctctgctgccaatgactgaaacgatttgcaaaaatcactgaagttggagacttctctccctcactaactttaagcatccgctatctgagcagctcaccgatcgctgcagctgtacacagcccatctgtaaacagcccatccaactacttacctcatccccatattgtttttattaacttttttttgctctttcaaggaccagtatttctacttgcacgtcatctgcacatctatcactccagtgttaatttgctaaattgtaattacttcgctaccatGGAATATTTATTGCTTTACCGCCTTACTccgtttgcacacactgtatatatatttttctattgttattgattgtacgtttgtttattccatgtgtaactaactatgtgttgttgttttttgtcacactgctttgctttatctttgccaggtcgcagttgtaaataagaacttgttctcaactg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU764089 False 2927 lncRNA 0.45 3 8949694 8961731
TU764088 True 5520 TUCP 0.44 2 8956093 8961731

Neighbor

gene id symbol gene type direction distance location
LOC118965490 LOC106571111 coding downstream 69766 8864199 ~ 8879928 (-)
LOC110529325 LOC106571107 coding downstream 86704 8758081 ~ 8862990 (-)
LOC110529319 LOC106571106 coding downstream 217824 8685360 ~ 8731870 (-)
LOC118965604 NA coding downstream 381974 8565390 ~ 8567720 (-)
LOC110529317 LOC105024319 coding downstream 573434 8363464 ~ 8376260 (-)
LOC110529323 LOC106571110 coding upstream 27714 8989445 ~ 8999694 (-)
cdc42bpb LOC106571112 coding upstream 50500 9012231 ~ 9125235 (-)
LOC100301659 LOC100301659 coding upstream 564138 9525869 ~ 9532652 (-)
LOC110529336 LOC106571151 coding upstream 682794 9644525 ~ 9650080 (-)
LOC118965597 NA coding upstream 812274 9774005 ~ 9791069 (-)
G670721 NA non-coding downstream 11423 8914234 ~ 8938271 (-)
G670718 LOC106571109 non-coding downstream 16214 8906247 ~ 8933480 (-)
G670715 NA non-coding downstream 20600 8904615 ~ 8929094 (-)
G670673 NA non-coding downstream 125861 8823453 ~ 8823833 (-)
G670742 NA non-coding upstream 6435 8968166 ~ 8968784 (-)
G670756 NA non-coding upstream 40876 9002607 ~ 9007895 (-)
G670703 NA non-coding upstream 95216 9056947 ~ 9057505 (-)
G670702 NA non-coding upstream 107264 9068995 ~ 9071183 (-)
G670791 NA non-coding upstream 197044 9158775 ~ 9159587 (-)
G670549 NA other downstream 371914 8577051 ~ 8577780 (-)
G670097 NA other downstream 607574 8340990 ~ 8342120 (-)
G669918 NA other downstream 838736 8107871 ~ 8110958 (-)
G669281 NA other downstream 1531459 7416025 ~ 7418235 (-)
LOC110529302 LOC106571090 other downstream 1535458 7400907 ~ 7423688 (-)
G670905 NA other upstream 302119 9263850 ~ 9265093 (-)
G671122 NA other upstream 384653 9346384 ~ 9347879 (-)
kif26aa LOC106571127 other upstream 1009951 9825982 ~ 10013023 (-)
G671820 NA other upstream 1153359 10034772 ~ 10121973 (-)
G672436 LOC107575789 other upstream 1776493 10738224 ~ 10738686 (-)

Expression


Co-expression Network