G672982 (LOC106571155)


Basic Information

Item Value
gene id G672982
gene name LOC106571155
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 11267278 ~ 11269909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU766612
CACTGTTCAAAATAACGGTTTATTGAAGTTGTGGCATTGTAGtacattgttgttgtttatgtccCTTTATTAGGTAAACTAACAATCAGCATGCCAAGAGGTAGAAATTAATATCagtcagatacacacacacactctgcattaGTCCTCctaaacacaaaacaaaatgacCTAAATCTATCATCATTCACACGAACACTGAAGAGTGCTGAAATCAATAACCTACTGACAAACAGCCTTCCAATTGATAAACACATACAATCGTCTGTGTTTGTGGTGGTAGGGGGAGCACCAATTGGGTGCCATTTCATGTTCCCCGACTGAGGACCTTTGCAGACTTGATCCTTGACCTCTAGGCTGATAAAACTATACAGTTCAAGTTAAGTCCAACCATGTATCACCCATCTCTCAACATTGAACTAACACTTTAACCAGGTTTTACCTATTAGAGAGACAATACAGGAGAATGACTCATGAGGAAGAGCTGAGTCCTGGAGCTggctcatgggggggggggggggggggggggtgcaagtCCTGGGGTTGGTGGGGGAGTCTGGGGccagagaggtgaggggtggaGACAGGGGTAAGTCCTGTGGCTGGCTCATGGGGGAGGAGACGGGGGTTTGGTAGGGGAGTCTGGGGccagagaggtgaggggtggaGTCCTGAGGCTGGTCCAAGTTTTTTCGTATTCTTTGTTTTTATGAGCGTTTATGTCCTCTTAGTCTCATtcactccttctgtgctgtgtacatttacaccagagatctgtatataatgactaGATGCTCATGTTTCCAccttaacaatgggagtcgttgtcccaaaggcgggaaggcaggtGACAAGCTTAAGTTCAAAATAAGCGCATAGGGCTTGGAGATTGGAGTGacacctctcgcttcgcctctttctCCCAAGCCCctaccacacacaacaacaaagatgagagATCACCACTTCTTCACTGACAAACGGTTTCAACTCTCTATTTGCATTTGacgtttggtccaacagaatggaTCATATGGACACCACAACACATGGAGAAATGATTATATTGTAATAGAGAAATGAACCTTTCTAATGAAACTCTGTTTATGTTTCAACTCCTCAGATTTTGAgcagagcagacactactaaAACACATTTACCAATGAACCTTCAGTTTGTCGCAAGCGCATTATGGTACCACGTATCACTAGCAGTATTTTAGTCAAATAAAGACTTACAccagctgtctagtctgttttataaatgtgcaataagcataaaacGAAGAAGTTGTCATGTCGTTCTCATTCAGAGATAAAGTAGGCCACTTGATtccaacatctgaacaaagtggacaggctagcatgctgttcaaacagttggagacggacagaagggtgtgttcataacgaTTCACCTGTTCTCCTTGTTAGCTGAATCCAGAGCTAGTGAAATTATACCTCGATCCAAGTTTGCTGAACTAGAAATATAAATATTAGCTGGGCACTAACTAGCACGTGGCCTTGTGCTTGAGACCGGTGTTCATTTTCTAGAATACCTgctacattattagtgaatgtgcattatgcatggttctggttaTTTTTAGACAGACctgaaagccagatcagtgattatagAAGACAATAAAgcaggtagaactatttttgaTGAAGTAATGattagtgggtcttatggttgtggaaggaaTATATTCAGCCTCGGTATGATTACACAAACTCTGAATTCATTAAATTACTTGACTGTTTTAAATGCAGTGGATTTGACCTTTAATTGAACAACAAAGCTTATTCAGAGatgtgtttttcttcttctagATATATGTAGTGAATCGCTTGtaagagaggtgaggagtggagaCCGGGGGTAAGTCCTGGGGCTGGCccatgggggtgggggggtaactTTATAGTCTGGCTGACCTGGAGCCCATGCCCAAAGCAAGCCTACACTGGGAATGGAGagccaggaagagagaggggtggttaATACAGGCCAGACAACCGGGTAGGAAGAGATTGATTACTGCTCAGGAACAAATCAGTAGTGATAAGGAGGGAAGGAGAACAGCTGAACAAAAAGATTAGtgatcattaaaaaaaataacgaGAACGAGTAAGAAACGTCTAAGACACCGATAGAGACACTTCCCCTAGAAACAGACTTCcagggaacccccccccccccctcctcctcttcatttgACCCAGGAGAGGCTGAGGCAGCGGGCGATGAAGGCGTACGTGTCGGCCACCTCCTGGATGACCTTTCTGGTGGGCTTTCCGGCGCCGTGGCCCGACTTTGTATCCACGTGGATGAACAGTGGATTGCTCTGACCCGACCAGCGGCCCACCACGTGCTGCAGTGTGGCGATGTACTTCAGGGAGTGTAGGGGGACCACGCGGTCATCGTGGTCACCCGTGAGGAGGAGGACAGCGGGGTACTGGACGCCCTCACCCTCGGGCACACGAATGTTGTGGAGCGGGG
>TU766613
CACTGTTCAAAATAACGGTTTATTGAAGTTGTGGCATTGTAGtacattgttgttgtttatgtccCTTTATTAGGTAAACTAACAATCAGCATGCCAAGAGGTAGAAATTAATATCagtcagatacacacacacactctgcattaGTCCTCctaaacacaaaacaaaatgacCTAAATCTATCATCATTCACACGAACACTGAAGAGTGCTGAAATCAATAACCTACTGACAAACAGCCTTCCAATTGATAAACACATACAATCGTCTGTGTTTGTGGTGGTAGGGGGAGCACCAATTGGGTGCCATTTCATGTTCCCCGACTGAGGACCTTTGCAGACTTGATCCTTGACCTCTAGGCTGATAAAACTATACAGTTCAAGTTAAGTCCAACCATGTATCACCCATCTCTCAACATTGAACTAACACTTTAACCAGGTTTTACCTATTAGAGAGACAATACAGGAGAATGACTCATGAGGAAGAGCTGAGTCCTGGAGCTggctcatgggggggggggggggggggggggtgcaagtCCTGGGGTTGGTGGGGGAGTCTGGGGccagagaggtgaggggtggaGACAGGGGGGTAAGTCCTGTGGCTGGCTCATGGGGGACGAGAGGGAGGTTTGGTAGGGGAGTCTGGGGccagagaggtgaggggtggaGTCCTGAGGCTGGTCCAAGTTTTTTCGTATTCTTTGTTTTTATGAGCGTTTATGTCCTCTTAGTCTCATtcactccttctgtgctgtgtacatttacaccagagatctgtatataatgactaGATGCTCATGTTTCCAccttaacaatgggagtcgttgtcccaaaggcgggaaggcaggtGACAAGCTTAAGTTCAAAATAAGCGCATAGGGCTTGGAGATTGGAGTGacacctctcgcttcgcctctttctCCCAAGCCCctaccacacacaacaacaaagatgagagATCACCACTTCTTCACTGACAAACGGTTTCAACTCTCTATTTGCATTTGacgtttggtccaacagaatggaTCATATGGACACCACAACACATGGAGAAATGATTATATTGTAATAGAGAAATGAACCTTTCTAATGAAACTCTGTTTATGTTTCAACTCCTCAGATTTTGAgcagagcagacactactaaAACACATTTACCAATGAACCTTCAGTTTGTCGCAAGCGCATTATGGTACCACGTATCACTAGCAGTATTTTAGTCAAATAAAGACTTACAccagctgtctagtctgttttataaatgtgcaataagcataaaacGAAGAAGTTGTCATGTCGTTCTCATTCAGAGATAAAGTAGGCCACTTGATtccaacatctgaacaaagtggacaggctagcatgctgttcaaacagttggagacggacagaagggtgtgttcataacgaTTCACCTGTTCTCCTTGTTAGCTGAATCCAGAGCTAGTGAAATTATACCTCGATCCAAGTTTGCTGAACTAGAAATATAAATATTAGCTGGGCACTAACTAGCACGTGGCCTTGTGCTTGAGACCGGTGTTCATTTTCTAGAATACCTgctacattattagtgaatgtgcattatgcatggttctggttaTTTTTAGACAGACctgaaagccagatcagtgattatagAAGACAATAAAgcaggtagaactatttttgaTGAAGTAATGattagtgggtcttatggttgtggaaggaaTATATTCAGCCTCGGTATGATTACACAAACTCTGAATTCATTAAATTACTTGACTGTTTTAAATGCAGTGGATTTGACCTTTAATTGAACAACAAAGCTTATTCAGAGatgtgtttttcttcttctagATATATGTAGTGAATCGCTTGtaagagaggtgaggagtggagaCCGGGGGTAAGTCCTGGGGCTGGCccatgggggtgggggggtaactTTATAGTCTGGCTGACCTGGAGCCCATGCCCAAAGCAAGCCTACACTGGGAATGGAGagccaggaagagagaggggtggttaATACAGGCCAGACAACCGGGTAGGAAGAGATTGATTACTGCTCAGGAACAAATCAGTAGTGATAAGGAGGGAAGGAGAACAGCTGAACAAAAAGATTAGtgatcattaaaaaaaataacgaGAACGAGTAAGAAACGTCTAAGACACCGATAGAGACACTTCCCCTAGAAACAGACTTCcagggaacccccccccccccctcctcctcttcatttgACCCAGGAGAGGCTGAGGCAGCGGGCGATGAAGGCGTACGTGTCGGCCACCTCCTGGATGACCTTTCTGGTGGGCTTTCCGGCGCCGTGGCCCGACTTTGTATCCACGTGGATGAACAGTGGATTGCTCTGACCCGACCAGCGGCCCACCACGTGCTGCAGTGTGGCGATGTACTTCAGGGAGTGTAGGGGGACCACGCGGTCATCGTGGTCACCCGTGAGGAGGAGGACAGCGGGGTACTGGACGCCCTCACCCTCGGGCACACGAATGTTGTGGAGCGGGG

Function

NR:

description
prolyl endopeptidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU766612 False 2508 lncRNA 0.46 3 11267278 11269909
TU766613 True 2510 lncRNA 0.46 3 11267278 11269909

Neighbor

gene id symbol gene type direction distance location
LOC110529181 LOC106571156 coding downstream 56844 11185737 ~ 11210434 (-)
LOC110529362 LOC106571157 coding downstream 82925 11162434 ~ 11184353 (-)
LOC110529363 tram2 coding downstream 105209 11148108 ~ 11162069 (-)
mrpl19 mrpl19 coding downstream 334815 10921591 ~ 10932463 (-)
mycn LOC106571147 coding downstream 474411 10786206 ~ 10792867 (-)
LOC110529367 LOC105021682 coding upstream 85436 11355345 ~ 11520698 (-)
LOC118965492 LOC106560407 coding upstream 477146 11747055 ~ 11764400 (-)
LOC110529371 LOC106571168 coding upstream 559050 11828959 ~ 11839997 (-)
LOC110529372 NA coding upstream 613151 11883060 ~ 11914200 (-)
LOC110529377 LOC106571175 coding upstream 715537 11984834 ~ 11997491 (-)
G672989 NA non-coding downstream 27590 11239422 ~ 11239688 (-)
G672987 NA non-coding downstream 29291 11237780 ~ 11237987 (-)
G672925 NA non-coding downstream 51161 11215844 ~ 11216117 (-)
G672924 NA non-coding downstream 52041 11214836 ~ 11215237 (-)
G672922 NA non-coding downstream 53067 11213994 ~ 11214211 (-)
G673049 NA non-coding upstream 72332 11342241 ~ 11342544 (-)
G673188 NA non-coding upstream 129553 11399462 ~ 11404873 (-)
G673285 NA non-coding upstream 269289 11539198 ~ 11539399 (-)
G673318 NA non-coding upstream 296137 11566046 ~ 11567129 (-)
G673322 NA non-coding upstream 304745 11574654 ~ 11575246 (-)
G672436 LOC107575789 other downstream 528592 10738224 ~ 10738686 (-)
G671820 NA other downstream 1145305 10034772 ~ 10121973 (-)
kif26aa LOC106571127 other downstream 1294466 9825982 ~ 10013023 (-)
G671122 NA other downstream 1919399 9346384 ~ 9347879 (-)
G670905 NA other downstream 2002185 9263850 ~ 9265093 (-)
G673053 NA other upstream 74564 11344473 ~ 11344782 (-)
G673863 NA other upstream 748707 12018616 ~ 12025742 (-)
G673867 NA other upstream 870461 12140370 ~ 12141994 (-)
G674015 NA other upstream 1013928 12283837 ~ 12284220 (-)

Expression


Co-expression Network