G673866


Basic Information

Item Value
gene id G673866
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12216835 ~ 12224401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU767587
GAAtgaatgtttgtttatttctCTGAATCACCTGAAAAATATGGTTATTTTTATTGTAGGTTATAGTAAAGTTGCATCTCACTGAGATTCAGCAGGAACAGAATATTGTAAACTCTTTCAAAACTCCTGCATTGCTGGATCCATGAATGGAAGGATCGTTCCCCTTCTTCCAATGCTATACGTTTCTGAAAGGTCTCACTGCGACCATACAGCCAGAGTACATTTTAACACAGTGTTAACATAAATATCGTTGCGGGACTTAAATATTTGCTTTCCTATACTGACACCTAAGCGTAGGGAGCTCAGGTTTATATAACAAATACCACATAGAGCTTCTTTTGTATCTACATGTAGTGTACAGAATTATAGCAGTATGTATCGAAAATGTGAATACCGGTATGTACATAAGTAATGCACTTGCTACCACCAGATAGTCACTAGTCAGAGTGCGGGGTCAAACTTGGTGTGCTGCTAAAAACACGTGTGACTCTTTGTTTTGAATCTGAGATGTTGGTgtcatatatatatttacacacaaacactcagttgccaatttattaggtacacccatctagtaccgggtcggacccccctttgcctccagaacagcctgaattctttgggcatggattctacaaggtgtggcGTTCAAACTTTGTTCAATTGTGAttaagggacctaacgtgtgccaggaaaacattccccacaccattacaccattgCAACCAGCCTATTCCATTGACACCAGGCACGAAGGGGCCATGGACTCCTGCTGCATACACCAAATCCTAACTTAACGTGAGGCAAGAGGAACCGGGATTCATCAAACCAGGCAATATTTTTCCACCCCtcaaattgtccagtgttggtgatcgcgtgcccactggcGCCACTTCTTTTTGCTTTTAGCTGATATGAGTGGAACCTGGTGTGGTCGACCAATAgaccatccgtgacaaggaccgacCAGTTGTtcattccgagatgccgttctgcacaccactgttgtattgtgctgttatttgtctgtttgtgtccCGCCTGTTAACTTGCACATTTCTTGCCATTTTCCGTCGACCTCTCATTAGGTTTTTAGAGGCTGTTAAGGAAACTGAACCATGGAGTACTGTTTCTTCTGGTCTAGACTACTTTCAGAGGGAGAAACAATCTAACAACTTGTAAAATACTGAACTTCCCATTTAATATTCATCAAGTAGTTCAATGGATAAAGGTACTGTGCAAAATAACTTCCTCTCCTGGTCTTGATTGTCACATATTCAGTACATTCGTTTTTTTATTCTGACGTACACAGCACACGTGGGGGTGTACATTTTCCTCACATTATAGCGTTCAACATTTTGCACTGACACAACCTAACAAAAATACCTTATATGGCGGGCACAAAAAACAAATGACATATTTCTACTAGATTGGAAATGATCATATAGTATAACATTTCTAAAATCtgttaaaataaaacaaaatcttAAAAGCACTGCCCTCACTGACTGGTCCCTACTGAACATGATTTCAATTTTTCTCAATATACTTCGAAGAAACTTCCAAAAACTAATTTCTAATGTGTTAGCTCAAGCAGAGTTGATGAAAATGAATTAATACAATAGATGTATTTAGCACATTTCTATAAGGTGTATACCGTTATATACTGTAACGTTTCGTGGGAACCTGATGCTCATATATGGACAGACTGACACCATTAGCTCCCATAATTCCCTGATACAGTCCTGACCTAAGACCAATAGCTTGTTTAAAGAACCATGGACTGACATCATTTCCTTCTAGCTGTTGCAGTGTTGTTTATCCAAAGTTCCACTGTCTGTTGTTGTCGATATCCGCCGATGTGATGGaggacagcagtagtagtacaTGCCTGTGTTGCAGTGGTCCGTGACTGACGGCGGGGCCATCGGAGGTTGGCTGACCCTGCTGAGGGTAAACAAATACACAGAGGTCAGAGTTGGAAGGTTTCAACCTAGTCTTCCTCATAGGGAATTGTTACTTACCGTTTCTTCCTCAACTTAGACAGGTCCCAAAATGTTCTCAATCTGTTCCACCCTTCCTGTCATGTCAGCTAGTGAGAAGAGTAAAGGCAATTCTTTTTCCGTGGTAAAACATTAGGAATAAGCTAACTTGAATAAAAGGTTAATAAACAGTTACATCTGAAAAACTCATTTATAACCTTttcatatacatatatttttttacaattgatCTACAACATCAAATTATCCAGTTGACAAAGTAGCATTTGCTTCCACAAATCTAAACCGCATAATGTCATGGTAGATCATGCAACCCAGCCCATTAATCATAAAAGGCATTCAAGATAACCCATGAATTGCTTTGAAGGAGGCATACCACTGAGTCTTCAGCCTATATTGAGTGCTGCGGTCAGTTCTTTTCCTACTGTGAACTAACAGAAAGGATATGTCTGGCAGTGATCTCCTGGAGGGCggcctgtgtctgcatctggaaAGCCAGTCTGGCTTCACACTTACAAgggtcctccaccaccaccaccgccttAATCTCTTCATGTTGGGACAGAGCAATATGTCACGTTAGTGTTAAATATTACATAatgtatgtacatacagttgaagtcggaagttgacattcactggttggagccattaaaactcgtttttcaaccactccacaaatttcttgtcaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacgtaatttttccaacaattgtttacagattatttcactgtatcacaattccagtgggtcagacgtttacatacacaaagttgactgtgcctttaaacagcttgtaaaattacagaaaatgatgtcatggcgttagaagcttgtgatcgactcaaatgatgtcaattagccttttggaggtttacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaaaaaattatagacctccacaagtcaggttcatcattgggagcaaggATGCCTGAAGAtaacacattcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagatacgttctgtctcctagagatgaacgtactttggtgcgaaaagggcaaatcaatcccagaacagcagcaaaggaccttgaagatgctggaggaaaccggcataaaattatctatatccacagtaaagtcCTATattggcataacctgaaaggccgctcagcaaggaagaagccactgctccaaaacagccataaaaaagccagactacggtttgcaactgcacatggggacaaagatcgtactttttggagaaatgccctttggtctgataaaacaaaaatagaactgtttggctataatgaccatcgttatgtttggaggaaaaagggtgaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtggtggtgctttgctgcaggagggactggtgcacttcacaaaatagatgacatcctGAGGTAGGAAaagtatattgaagcaacatcaagacatccgtcaggaagttaaagcttggtcgcaaatgggtcttacaaatggaccatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatggaaaatttgtgggaagaactgaaaaagcgtgtgcgaggacagaggactacaaacctgactcagttacagcagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctacctgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgaatgtaaacttctgacccactgggaatgtgatgaaaaataaaagctgaaataaatccttttctatactattattctgacatttcaagttcttaaaataaagtggtgatcctaactgacctaaaacatggcatttttactaggattaaatgtcagaaattgtgaaaaactgagtttaaatgtactcgtctaaggtgtatgtaaacttccgacttcaactgtacagtagATAACACCACACAGGAGGAGCCTCTCACTCAATACCTCCCAACTAATGTTGTTATAATGTTGAGTTCCATATACTAGTAGGGCTTGCAATTGTTCTTCTACAgaccagggttgtgttcagtagagtacatcGTAGCAAAAGATGTTTTGCACTGGAAAATAAATGTGTTCTTATTGGACTAGATCAGGTAGTGTCTGGAACATTTTCTCCCTACTAAACATGACCATGTAGAAGTACTTTACCTACGTTCAACTGATCCTCTTTGATAGCAGTAGACATACCCCAAAACTAATCCCTTACCTATTTTGGTTTTGCTCTCGTGTTCTCTAGTAGGCAAGACGGACAGCACAGAGAGTTTGGTTCCATTTGCATGGCCATGACAGGAACACAATGCTTTGACATTGTTGAAGCAACCTAGCGAGTGTTACAAAGTGTTCGGCAAATGGAAAACCAAAGGTGAATCAAGTAGTAATATTGATTGTGCACCAGTTGGATTTTAAAAGCGGAATGAAGACTTATCAATCATATGCTGCTTATAAGAAAACAAGCAAATTCGAGATCTTCTGTGATCACCATCCATAACGGGTCGAGCATCTTAGCAGACTCAACATAAAGTTCAAATTATATAAAGGAGGCATATTTAGAATACAACCACAGTTAGCCCACTGACTCTTACGTTTCAGAGTACACGTTTTCTGGTCCAGGTTCAAGATATAGCCCTTCCGACACTTGCAGTGATGGGACGCGTTGCTGCTGACACATATGTGCTCACAGTCGTGTCCCATGGCACAGGGGTCCACACCTGGAATAAGCCGGGGTTAAGGGAAGGAGCTGACAAGCTAGCAGCATGGGTACAATTTCATAGGCTGGCATCATATTTGAAACTGTTAGTTTGTATGCATAAGGATTCTAAGTAAAGGTGATCTGGGGTAGTACTCTGAAGAAGCCATACTATCAAACATACTTACCTCACTGTATGTAATGGTCATTTATAACTCATTTATTCAATTTCATTCCTGGATGGCAATTTGATAGAAACGCTCATTTGTGAAGATACCataacatatatatatatatatatatatatatatatatatatatatatatacacacacacacacacatatatagggacacattttgccatagccTGTTTGATGAAATTGTGGATGCAAAGGACACTTGTATTATCTGAGTTCCAGTGGCAATATTTGCAAGCTTCAAAAAGCTGTATGGAAGTATATATTGACATAGTGCCAGCTATACACTGTGGCTGGAAAGCTGTTGGACCATACACCTTCAATGCAACTCAGCCAAGGTCCTTTGCAAACATAGTGGGGAGGTTTACGTGTCTGACTCTGGGAACATGTTTTCTTGTCCGTGTTCAAGAGATACCCTTCCCGACACTCGCAGTGATAGgagttgttgctgctgctgctaacaCACATGTCCTCACAGTCGTGTCCCATGTCACAGGGGTCCCAACCTGGAATAAGTTGGGGTTAAGTGACGCCgccatcaagctacacacaaagCAGCATGGGTACAATTTCATAGGCTGGTAAGTTTGGAACGGTTATAGCTTGTATGCATTCAAAAGTGATCTGAAGAAGCCATATTATCAAACATACTTACCATGTATAAACGCTGGTCGTTTATAACCCATTTATAATCTAATTTCTCTAAGAAAACCTCATTTCTGTATATAGTATAAATAGCATAACAAGTATAGATACCATAGCAAAATGAACTAAGACATGTTTTTGAGCATGTGCGTGTAAGTGCAGAAGTTAGAGACATTTTTCCATAGCCTGTTTGATGAAATTGTAGACGCAAAAGACTGTTTGTTGTATTGTCTGAGTTCCAAGCTTCAAAAAGGTGTATGGAAGTATATCAATAGACTATTGAAATAAGGCCAGCTATACACTGAAGGCCACCTAATGTGACTGGAAAGCTGGTGGACCATACACAAACTCAGTCAAGGTTCATTGCAAACATAGAAGGGGGACAgttaacataaaaaataaatacattttaaaaacaatatTAAAATGTACACAACATTCAAGTTAATAAATATTAGAATGTTATGAAAAAAAAGTCAATTTACTATTCAAAATGACTTCGAAGATTTTAGAACAGTATTCTGATCATTTTAAACAAAGCTGTACGATTGACAGATTCAAAGCGATCTGTGTGTGGCATGAAGCTTTGATTTCTCATTGGTCAATCGTTAATGAGCAGTTACCTCTTCGATCACCTTGCACTTGTTGAAGGTCCATCCTGTCTGTTACTTAAAGTGAGGAACCATACCTGACTGTTCACTAGAGACCAAGATTGGCAAAAACTCTTGGGGcgggtttcccagacccagattaagcctaCTCCTGGACTAAGAGGCACTTTCAATAgagattctccattaaaatagatttttaatcTGTGACTAGGTTTAATCTAAATGTGGGGAAACAAGCCCAGAGTAGACAAATGGCCGAACTACTTTCCAATGGGCTGGAATCTAGTACCAGGGTATATAAACCTTTAATCCACGTGAGGTGTGTTTTTTCTCTTTACCATTTGGTCAACGTATAATTTACACTTTAGTAGAAAACCTAAGGATTCAAAATGAAGTGCTAAAGAGAAAACAGATTAAACCACCCCTGTAGACGGTACACATTCTCAGACTAAAACCAACGTTTACGGTTTAGACtagtctcctcctccaccctgctCAGTCATACCACACAGGGTCTCCCTGAATTTGGAGGTGAGCTTCTCGATGACGCCGTAGGTCTCCACGTAGAACACGTGGTCTTCCAGAGGGTTGCTGGCCATCAGCCGCAAAGAGGTCATGTCGGCTCGGTCCACCCCCACCGCGTAGATCTCGATGCCGGACCCCCGGGCAGCCGCTGACACCTCCTCCACCTGGTCCTGAGGACGCCCATCTGTCACGATGATGGCCACCTTGGCGATGTTCTTTGACTTTGGCCGGGCGCCTGACTCTTCGGTGAAGGCCTCGGTCATGGCCGACTTGATGGCCAGGCCAGTCATGGTGCCGGCGGCGAGGGGCTCGATGCGGGTGATAGCCTGCTTCATGTTGGGCTTGTTCAGGTGAGCCTTGAGCAGGAACTCGATCTTGACCGTGCTGGCATAGTTGACCACGGCCACACGGGTGGCTTCTGGTCCCACGTCCAAGGTGTCGACCATGTCGGCCAGGAAGATCTTGACCTTCTCAAACTCGCCAGGGCGCACACTGCGGGAGCTGTCGATGATGAAGACCAGGTCCAGGGGACGGCTCCTGCAGGAATTGTCTGTC

Function

NR:

description
matrilin-3-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU767587 True 7539 lncRNA 0.42 2 12216835 12224401

Neighbor

gene id symbol gene type direction distance location
LOC110529387 rhob coding downstream 53147 12161773 ~ 12163688 (-)
LOC110529379 hpcl1 coding downstream 187526 12026183 ~ 12029309 (-)
LOC110529184 LOC106571176 coding downstream 201089 12013722 ~ 12015746 (-)
LOC110529377 LOC106571175 coding downstream 226314 11984834 ~ 11997491 (-)
LOC110529372 NA coding downstream 330986 11883060 ~ 11914200 (-)
mideasa LOC106571189 coding upstream 92205 12315015 ~ 12330035 (-)
churc1 churc1 coding upstream 121506 12345907 ~ 12348688 (-)
capn3b can3 coding upstream 150460 12371350 ~ 12412260 (-)
si:dkey-12h9.6 LOC106571193 coding upstream 215577 12439978 ~ 12457014 (-)
rd3 LOC106571197 coding upstream 317469 12541870 ~ 12552126 (-)
G673966 NA non-coding downstream 5968 12210642 ~ 12210867 (-)
G673943 NA non-coding downstream 6587 12205050 ~ 12210248 (-)
G673942 NA non-coding downstream 60440 12156171 ~ 12156395 (-)
G673941 NA non-coding downstream 60952 12155596 ~ 12155883 (-)
G673944 NA non-coding upstream 5661 12230062 ~ 12231219 (-)
G673988 NA non-coding upstream 26462 12250863 ~ 12251149 (-)
G673994 NA non-coding upstream 40064 12264465 ~ 12264811 (-)
G674000 NA non-coding upstream 49416 12273817 ~ 12274118 (-)
G674001 NA non-coding upstream 50114 12274515 ~ 12274784 (-)
G673867 NA other downstream 74841 12140370 ~ 12141994 (-)
G673863 NA other downstream 191093 12018616 ~ 12025742 (-)
G673053 NA other downstream 872053 11344473 ~ 11344782 (-)
G672436 LOC107575789 other downstream 1478149 10738224 ~ 10738686 (-)
G674015 NA other upstream 59436 12283837 ~ 12284220 (-)
lpgat1 lpgat1 other upstream 391479 12615879 ~ 12697323 (-)
LOC110529426 NA other upstream 1150538 13373030 ~ 13451428 (-)
G675413 NA other upstream 1259692 13484093 ~ 13484934 (-)
G675415 NA other upstream 1261278 13485679 ~ 13486137 (-)

Expression


Co-expression Network