G674254


Basic Information

Item Value
gene id G674254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 12429554 ~ 12431319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU768046
TCGTGTTTATTTCaggaagtgaaatttaaaaaggAGAAAGGTGTTGCAGAGCCAGATACAGCAGAGgcatccctgttcctggagtgcatTGACATTCtgttccaactaggcaccacacctgaccaacggagctaattgatcagttcggTGATGGCAAATATTCAACACACCTggccctccaggaccagggttgcctacccgAGACACAACATTATGTCCAGCATGACACACTATAGAAGAAAAATACCAAAcccacacccctccctccccctaacACATGCAAATCGTTACGTTGCTGGTTAAAACCATACCTAAGCAGTAGTAGTTATTGTATTTGAAAAGACGAGTTAAAACAACCAAAACAGTACATTAGTGCAAACTAGCAGCAAGTGGACTCGACAGATACTAGGAAAGTGGGTGTTTGTGACTTCTTTGTATATTCTGTGCTGCATCTGATTTCAAGCAGAACATGTGCTTTCAGAGGATCAGCGATACAGTCCTGTAACTCCCACACTGATACTGTATGTCTTATGACAATACGTTATTCTCAGTTTAACATACAGGCCTTCGCCCACACCACATTCCTCACTTTAGTTTCTGTAAAGAAAAAATATCTTCCCTTCACAATGGTTGATTGAATAGGAATGTAGTGTTAATTAGGGAGTGATAATTGTTAACTTGCAGCCAGTTTAGTTTAAGGTATAAAGAGTGCATGCATGTATTCACTACACGTTATGAGTCAATTTATTTGTTAAGGAATGTGACTATTGAGGTAAGCCAATAGTCTTAAAGTGTAAACCAGAGGTCTTTACGTGAATACTGTTTCactgcgtctgaaatggcaccaaAACATACATTGGAAAAAACACATGACCACTTTAACATTTGCAAAATAAAACTTTAAAGAGTAAGAAACAGTCGAGTGACAAAGTTCCTTCTCATAGAATAATTCAAATTGAAACGTTTGTATGtggaccccgggaagagtagctgctgcatgggCAACAACTACTGGGGATCCTAATGAACTAAACATTCACGAAAAGAACCAACCGGCTCCGTGCTGAAAGTTCATGATAGACCATATTGATAAATAACTTATTAATAATCCCAACATTTGGACTGCAATCAGCTCTCCCACTCCCCACCTGAGCTCAGGTAAAGGTGTCGTCATAACTACAGCTACATCTCATTCTGATAATACAAAAGGAAGTTGGGGGGGGGCGCATCACACTCACATCAAAGGAAGATGCCCACACACAGCACCATGCATAAGTACATCGGAACGCGAGACCGAAAATTCTGATAGTTGTGTGTAAAAACTCCTTAAAAATGTTCAAAATATAGCTCATAATACTGACTAAAGTGACAACGAGTCGTTTTTCTTTTAAAACAGAAGCAAATGGCTACACAAAATATACTAGAAGCATAAgtacaaaaaaaatactaaaacacctaggggggtgggggtggggggtgggacagGGACAGGCCAAGACCTTCCCCTGTGTCCCTGCAAAGCTTTCCCAATTTTTTTTGTGAATGACAGCAAAGTCCTGTGTGAGAGGAtgaggacagggggggTGAGGCTCCTCTGCTATGAGGAGACGGTGACCGGATTCAAGAATCCGTTCCGGCTGTAGAACTTAGAGAAGGCCTCTTCCAGAACCGAAGCGAGTCGTGGCTGGT

Function

NR:

description
nuclear receptor-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU768046 True 1689 lncRNA 0.42 4 12429554 12431319

Neighbor

gene id symbol gene type direction distance location
capn3b can3 coding downstream 17294 12371350 ~ 12412260 (-)
churc1 churc1 coding downstream 80866 12345907 ~ 12348688 (-)
mideasa LOC106571189 coding downstream 99519 12315015 ~ 12330035 (-)
LOC110529387 rhob coding downstream 265866 12161773 ~ 12163688 (-)
LOC110529379 hpcl1 coding downstream 400245 12026183 ~ 12029309 (-)
si:dkey-12h9.6 LOC106571193 coding upstream 8659 12439978 ~ 12457014 (-)
rd3 LOC106571197 coding upstream 110551 12541870 ~ 12552126 (-)
slc30a1a znt1 coding upstream 161363 12592682 ~ 12602018 (-)
nek2 LOC106571199 coding upstream 173377 12604696 ~ 12610815 (-)
lpgat1 lpgat1 coding upstream 184560 12615879 ~ 12697323 (-)
G674209 LOC106571191 non-coding downstream 75754 12350335 ~ 12353800 (-)
G674204 NA non-coding downstream 104172 12325158 ~ 12325382 (-)
G674046 NA non-coding downstream 123675 12305666 ~ 12305879 (-)
G674208 NA non-coding upstream 1128 12432447 ~ 12433143 (-)
G674326 NA non-coding upstream 135728 12567047 ~ 12567554 (-)
G674332 NA non-coding upstream 141779 12573098 ~ 12573901 (-)
G674334 NA non-coding upstream 144557 12575876 ~ 12576161 (-)
G674336 NA non-coding upstream 146123 12577442 ~ 12577667 (-)
G674015 NA other downstream 145334 12283837 ~ 12284220 (-)
G673867 NA other downstream 287560 12140370 ~ 12141994 (-)
G673863 NA other downstream 403812 12018616 ~ 12025742 (-)
LOC110529377 LOC106571175 other downstream 432063 11984834 ~ 11997491 (-)
G673053 NA other downstream 1084772 11344473 ~ 11344782 (-)
LOC110529426 NA other upstream 943620 13373030 ~ 13451428 (-)
G675413 NA other upstream 1052774 13484093 ~ 13484934 (-)
G675415 NA other upstream 1054360 13485679 ~ 13486137 (-)
G675834 LOC106571238 other upstream 1552307 13983626 ~ 13986108 (-)

Expression


Co-expression Network