G675834 (LOC106571238)


Basic Information

Item Value
gene id G675834
gene name LOC106571238
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 13983626 ~ 13986108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU769793
CCAGTTCCAGCTGATTTATTTAGTTTTGTCAAGATACAGCCTTCAGCATGACGACACGTAACGCAGATGATCCATTTAAGAGTAGCCTATATTGCACAAAATAATGAAGAAAACAATATGTGCCATTAAGATGATAAAATGCAAGAAAATGCAGTTTCACACCTGCTATCTGGGACCCATTCACACCGATATACATAAACTCCTAACTTTACTATTTTACAGAACATATACAATCTTGAATCTAGTACCAGCAATGAGGTCTATATTCCCCAATTGCAACTTAACTCCTTAAAACACCCCAAATCTGATCTAGTTCTGTACATACATAGCTTAAAATAAACGCAAGGCATTTAGATGCAAATTTATATTGTTTAACCCTTGTGTGCTAAACTAAAATGAAACCGGGTAGAACTAGAAGTGCCTGAAAAAAAACTCACTGAAAGCACAGTAAGAACATTCCCTTAGTTTAACTGTACAAAAATATGCCTGAAaatattttacttttttttattttttaaagatgaGGTATGTTGGTTATGTATCAAAATGCTGCTTCCTGTCATACCTGTGTTCTACAGCGGGTTTAGCCTACTTTTCCATACCAGTAGGGATTCGGAACTGATAAGAAAAAAACAGTTTTGTGAAATACAGAAAAATCACATAAAACCTTTTGAAAAGTTACACATCCTGAATGAACAGTGTCTCAGATTTAGCCTGCATCTGCCCAGTCGTGCTTTCAGAACCCAAGTGGTTACAAGTAGGATGGGAATGCATAGTTCAGATTCTACTCTTTGTGGTCCACTTAATTTGAGCAGTTTCACTGCAGACCCGAAGAAAATCCATAAAACCCTGTCAGGGTGACATGAATGTCACTTTTTTTTGCAATGGTACCACATTGTAACGAATCTTGGTTCAGTTCATGGAGGacaccctccttccctccatggtAATAACAGCGCTGGGGAGGGAACCGGCTGATCATAACGCTGTCCCACCTACTACCAGAGGATGACTCCTTCTGTACTTAGTTAGCTAGTAGGTAAATACCAAATCTGAAAAGTTAGCCTCAAGCCAATCCCCTGCGATCATTTCGCTCAGCTCGGGGGTGCAATAGTCTGGGAATTCAAAGTGAGAGCTGAGGCTGCCCTCACTGAAAGAGTCCAAGTCCTTATCcacaaaggaaagagagagattccCTGAATTCGAGTTCCCCAGCTCCGCTCCGTGAGCACAGGATGCTAAATTTAAACTGAAGTCAACCAGTAAATCATCCGCGTCTTCGCTGGAGCTGGACGAGCTGGACACGGACCTGAATGAAGATGCTGGTGAGAGTGAAGCAGGACAAGTTGTGCTCTGCTTGGTAATGTTCTTGAAATTGTAGAACAGTCTGTTGGAAGCTGTGTTCGGATTCCGAGACTCATCGTACATGCTCGCGCCCTCTGTCTCGGCAGTGGAGCTCAAAGTGGGGCTCGCGGGCACTTTGGCGATGTTGTACGGTATCGGTTCCTCGTCCTCCTCCACTTTAATCCGAGAGGACAGCTCCTCCTCGTAGTCCTCTTCGTCATCCTCATCGTCAGTATATTCCATTTTTACGGACTTGCTAGTAGTTTTAAAGCTGGTGAAAACATAGTCGTAGCGAGGGTCGTGAGACGGTCTCGTTTTCACCACCTTAGTAGTTTTCAATTTAGTGAATTTCTTACTGGGAGCTTTTACATGTTTGAGGCTGGTCTTCTCCGGTGACTGCACCGCTGGTTTAGTGAAACTGTCGAGCTTTGGTTTCTTCTTGGGTCGGTACTTGTAGTCGGGGTAATCAGCCATGTGTTGTAGCCGGAGCCTCTCGGCTTCCCTGATAAACGGGATCTTTTCACTGTCCTTCAGCAATTTCCACCGCTTTCCAAGTCGTTTGGAGATTTCCGCGTTGTGCATGTCCGGAGACTGCTCCATGATCTTTCTCCTCTCGACTTTCGACCACACCATAAATGCATTCATGGGTCGTTTGATGTGACCAGTTGCTGTCTTGCACCAGTCGGCTTTCACGGGTTTCAGTGGCACCGGGCTGCACGCCATCATTTCGCTTTCCTCCGTGTCTGTAGCTTCCCTGGACATGCTACTCTCCGTCTCGCTGTGTTCTGTTTGCTGTACCATGTTTCCGTCGTATGTTTCAAAGGCACTGCAGGGTTTCAAATACCCACAGTCACTTTCTGCTAACTCCTTGCTTTGCTAACTAGTTTTTGGTCACTCTACACCTCCAGCTCATTCAAACAACTCTTTCTCAAAGTTATCAACTGCCCTCTTAACTAGTTCTTTGGGCTTTCATATCGGTTACGTCATTTTTTAGTACCCAATCACGGCTCTTAACTCCTCCCAGCGGCCgccagacattattttaaccctTTGCTGCCACACAAGATTTCATTGGTGGTGGGGGCATGTGGGCGGAATTATTCATGCTGTCTGGATTTATACCTCAGTGGGTGTGCGAG
>TU769790
CCAGTTCCAGCTGATTTATTTAGTTTTGTCAAGATACAGCCTTCAGCATGACGACACGTAACGCAGATGATCCATTTAAGAGTAGCCTATATTGCACAAAATAATGAAGAAAACAATATGTGCCATTAAGATGATAAAATGCAAGAAAATGCAGTTTCACACCTGCTATCTGGGACCCATTCACACCGATATACATAAACTCCTAACTTTACTATTTTACAGAACATATACAATCTTGAATCTAGTACCAGCAATGAGGTCTATATTCCCCAATTGCAACTTAACTCCTTAAAACACCCCAAATCTGATCTAGTTCTGTACATACATAGCTTAAAATAAACGCAAGGCATTTAGATGCAAATTTATATTGTTTAACCCTTGTGTGCTAAACTAAAATGAAACCGGGTAGAACTAGAAGTGCCTGAAAAAAAACTCACTGAAAGCACAGTAAGAACATTCCCTTAGTTTAACTGTACAAAAATATGCCTGAAaatattttacttttttttattttttaaagatgaGGTATGTTGGTTATGTATCAAAATGCTGCTTCCTGTCATACCTGTGTTCTACAGCGGGTTTAGCCTACTTTTCCATACCAGTAGGGATTCGGAACTGATAAGAAAAAAACAGTTTTGTGAAATACAGAAAAATCACATAAAACCTTTTGAAAAGTTACACATCCTGAATGAACAGTGTCTCAGATTTAGCCTGCATCTGCCCAGTCGTGCTTTCAGAACCCAAGTGGTTACAAGTAGGATGGGAATGCATAGTTCAGATTCTACTCTTTGTGGTCCACTTAATTTGAGCAGTTTCACTGCAGACCCGAAGAAAATCCATAAAACCCTGTCAGGGTGACATGAATGTCACTTTTTTTTGCAATGGTACCACATTGTAACGAATCTTGGTTCAGTTCATGGAGGacaccctccttccctccatggtAATAACAGCGCTGGGGAGGGAACCGGCTGATCATAACGCTGTCCCACCTACTACCAGAGGATGACTCCTTCTGTACTTAGTTAGCTAGTAGGTAAATACCAAATCTGAAAAGTTAGCCTCAAGCCAATCCCCTGCGATCATTTCGCTCAGCTCGGGGGTGCAATAGTCTGGGAATTCAAAGTGAGAGCTGAGGCTGCCCTCACTGAAAGAGTCCAAGTCCTTATCcacaaaggaaagagagagattccCTGAATTCGAGTTCCCCAGCTCCGCTCCGTGAGCACAGGATGCTAAATTTAAACTGAAGTCAACCAGTAAATCATCCGCGTCTTCGCTGGAGCTGGACGAGCTGGACACGGACCTGAATGAAGATGCTGGTGAGAGTGAAGCAGGACAAGTTGTGCTCTGCTTGGTAATGTTCTTGAAATTGTAGAACAGTCTGTTGGAAGCTGTGTTCGGATTCCGAGACTCATCGTACATGCTCGCGCCCTCTGTCTCGGCAGTGGAGCTCAAAGTGGGGCTCGCGGGCACTTTGGCGATGTTGTACGGTATCGGTTCCTCGTCCTCCTCCACTTTAATCCGAGAGGACAGCTCCTCCTCGTAGTCCTCTTCGTCATCCTCATCGTCAGTATATTCCATTTTTACGGACTTGCTAGTAGTTTTAAAGCTGGTGAAAACATAGTCGTAGCGAGGGTCGTGAGACGGTCTCGTTTTCACCACCTTAGTAGTTTTCAATTTAGTGAATTTCTTACTGGGAGCTTTTACATGTTTGAGGCTGGTCTTCTCCGGTGACTGCACCGCTGGTTTAGTGAAACTGTCGAGCTTTGGTTTCTTCTTGGGTCGGTACTTGTAGTCGGGGTAATCAGCCATGTGTTGTAGCCGGAGCCTCTCGGCTTCCCTGATAAACGGGATCTTTTCACTGTCCTTCAGCAATTTCCACCGCTTTCCAAGTCGTTTGGAGATTTCCGCGTTGTGCATGTCCGGAGACTGCTCCATGATCTTTCTCCTCTCGACTTTCGACCACACCATAAATGCATTCATGGGTCGTTTGATGTGACCAGTTGCTGTCTTGCACCAGTCGGCTTTCACGGGTTTCAGTGGCACCGGGCTGCACGCCATCATTTCGCTTTCCTCCGTGTCTGTAGCTTCCCTGGACATGCTACTCTCCGTCTCGCTGTGTTCTGTTTGCTGTACCATGTTTCCGTCGTATGTTTCAAAGGCACTGCAGGGTTTCAAATACCCACAGTCACTTTCTGCTAACTCCTTGCTTTGCTAACTAGTTTTTGGTCACTCTACACCTCCAGCTCATTCAAACAA

Function

NR:

description
transcription factor SOX-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU769793 False 2483 TUCP 0.44 1 13983626 13986108
TU769790 True 2265 TUCP 0.44 1 13983844 13986108

Neighbor

gene id symbol gene type direction distance location
LOC110529435 LOC106571224 coding downstream 350770 13626761 ~ 13632856 (-)
LOC110529434 LOC106571223 coding downstream 382065 13598376 ~ 13601561 (-)
hsp90ab1 hsp90ab1 coding downstream 424875 13552248 ~ 13558751 (-)
tmem151ba tmem151b coding downstream 474292 13496434 ~ 13509334 (-)
LOC110529426 NA coding downstream 599171 13373030 ~ 13451428 (-)
LOC110529441 LOC106571256 coding upstream 354392 14340500 ~ 14392658 (-)
LOC110529444 LOC106571255 coding upstream 409903 14396011 ~ 14471129 (-)
LOC110529446 LOC106571252 coding upstream 563573 14549681 ~ 14573584 (-)
LOC110529453 LOC105017813 coding upstream 737664 14723772 ~ 14748569 (-)
LOC110529452 LOC106571249 coding upstream 769883 14755991 ~ 14850443 (-)
G675826 NA non-coding downstream 4914 13978488 ~ 13978712 (-)
G675810 NA non-coding downstream 18894 13964506 ~ 13964732 (-)
G675743 NA non-coding downstream 96875 13886551 ~ 13886751 (-)
G675742 NA non-coding downstream 98162 13885254 ~ 13885464 (-)
G675675 NA non-coding downstream 155759 13827550 ~ 13827867 (-)
G675837 NA non-coding upstream 2918 13989026 ~ 13989305 (-)
G675841 NA non-coding upstream 4299 13990407 ~ 13990640 (-)
G675842 NA non-coding upstream 5048 13991156 ~ 13991384 (-)
G675877 NA non-coding upstream 27845 14013953 ~ 14014194 (-)
G675879 NA non-coding upstream 29246 14015354 ~ 14015591 (-)
G675415 NA other downstream 497489 13485679 ~ 13486137 (-)
G675413 NA other downstream 498692 13484093 ~ 13484934 (-)
lpgat1 lpgat1 other downstream 1286303 12615879 ~ 12697323 (-)
G674015 NA other downstream 1699406 12283837 ~ 12284220 (-)
G676077 NA other upstream 220879 14206987 ~ 14207625 (-)
G676178 NA other upstream 301741 14287849 ~ 14288345 (-)
G676635 LOC106571254 other upstream 525482 14508329 ~ 14516528 (-)
G679087 NA other upstream 2446513 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 2638982 16625090 ~ 16630259 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding CM030121.1 CM030121.1 7978775 ~ 7980197 (+)