XLOC_026045


Basic Information

Item Value
gene id XLOC_026045
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6046988 ~ 6051076 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052924
TACAGTACAAGACTAAAGGACTAGGCTGCAGCGAACATTTCCAAGAAAACAAGACACCCACGACATCTTTAATATCCACCAGGAAACTCCATTTGCTGTCTGGATTCAAGATATCCTCAGGTTTGACTTTTACGTTTATGTTGTAAGTTCAGTTTGATTAAACCTAAGCAACAGTTTTATGGACAGTGTggaaatccaacacaatctcacggcaatttgtaactttttgatttagtggctaatttgtaaaagtggcagataTGAAGAGATTTAACAAATTGATTAGGAAAGCTGGCGCTGTGGTGGGTGAGGAATTGGACAATATGGAGACTGTGGCCGAAAAGAGAACATTGTGCAGACTTCGGTCAATTATGCACAATGTAGATCATCCTCTTTATAATGTGGTTGACGAGCTGAGAAGTACCTTTAGTCACAGACTTACCAGCTTAAAGTGTTCCACTGAACGCCACAGAAAATCCTTCCTTCCCACTGCTATCAGACTTCATAACGTCTCCCTCAGTCACTTACCCTCACAGTAATTTATGCAATATCTTGCTGCTCGTgccatatattaattaattattacggGTTTTAATGCGTGGAAGTCTGTGCATTATGTTCTATGATGTGCAATAGTCTATTAGGTGCAATATTTGTACGTTTTTTTActgggtcttaaatatttttagtgcaatatctttgttttttaaatgagtgcTGAATGACTTTACTACTTGAATTATTGtatgtgtaattgttttatgtgtaatattagttttggttaatattattttcattacttgatatatgacttattagtattagttaccactgattcttttaagtgtaatatcttatataatagtttgtatacttatgtattgtggctgtttccttttatagattggttggatttatgtgacttatttcacttatttaatttatttattttgtcttgtggttttgtgtttctgtgttctgtgtgttatggcagtcattacataagcaatttcctgcgggataaataaagttttctaagtctaagtctaagtctaatttgtacaaattcgtacgatctaattcgtacattttagtacgatttgcgtatcccccaatgacggttgggtttaggggtggggttaggtgccacgcctcctttttaaaattgtacattttcttaagactgaactcatacgaattagccactaaactgccaaaacgtaaaatacttacgttttctcatgagatcaggctgggaaaTCTTGGTTTTATCAGAAGCATTAGAGCAGAGGTTTGATTAGTCAGAatacacattttatgttaatgcactgcaaaaaaaaaaaaatgcttttcttaccaagattttttttgtcttgtttctagtccaaatatctaaaagttcttaaatcaagaagcattttctagacaagcaaaacatattgtcttgttttaagaaataatatgccaaaatgaagtgagattTTAAGCTCTTAATAAGCTTTTTGAACCTCTGAGACTCAGTAATCTCTGCACACTGGTGTCAAATCAGTATGAAACGCATAGCCTTCATACATTTTAAGAGCTGGGTGTAGAGCAAATGCAAGTATGTGCACATAACAGTAACATGTCTTTGGTGTCAATAAAATGTCTCAGCGTTGTTCTGTTTGGAAATACTAAAGTGttctgtgcctgtgtgtgtgtgtgtgtgtgtgttatagaaCAGTAGATCTGAAATCTGAGCAGCAGATGTTCCCGTTTATCTGAAAGGTCTTTACAAACCTGTTGATGTGAGTatatatttgtttctgtttaagcCCTTAACTAAGATGATTTTATCAGTTTTCTTgtcaagacatttaaaaaatgtcattgcttTCGTCAGGCAGGGGAGGAGATCTTTGGCTTTGGCTTTGGATTGCTTCATTCCTtaactgagggtgctttcacacctgtgaatcgattcagttgttccgaaacagagattacaattgttacattgttgctcttggagcggttcgctttcacactgcaaagtttctaatcggaccaaaagagctaaaacaagtcacgtgcgagtaaactctcctcacattagtCAGTGTGTCAGGGTTTTTTTTGCAgcatcccgctaagctgtcaggagaggtggtggtttggtagtgattgacagggtgcgcgagcgcgcgacgtgtctgaggagagacgtggtggggagaagggtgcgcgacgatgcctatttaaggactgggagggagacacgagattaccgggagatcatcattcgtttgcgggcatccggagactcgcgaaacttcccgccctactcataattctctcttcaaatagttgtaagcctattacatatctataaaacactgtgatataaccgcgctcagatcggatcgctttctcactgcaatcgaaccgctccagggttcgtttgaatcgagccgagaccacctcattcaagcgatctcggagcgattactttggagcggaacagagcgcgattgccctgttcacatatgccaaacgaaccgcgctaactgggcaaataagacacgttcccaaacaaaagtgtaggtgtgaaactCACCCTGAGTTTCTTGCTCTTTTACAGCAACATGAGTTCAAACAACCAGCAACGATCTGGTGGAAACGGTAAAACCACTCTTGAGAAGCATGGAAATGACCCACCTGATGTCACTTTAGAAGAAATAGCAGAGGATTTGCTTTCTTATATTGGAGGATCTCCTCACCTAAAGAAGACAGAGAAACAGATTGAAAGGAAATACAGCATTGAAAAGAAGGATGGTGATTACTGGTCAGCCGATGACATCAAGAAAGCTTGGGGGAAAACACAGAGGATGagaaaaactgatttaaaacgaAAACGCTGGGCTCTTGCACTATTGTTCCAGCTAATAAATCGAAAGGCAGTCAAAACAACGACACAGTGCGATGATGACAACACTGGAAATGTATCCCAGCCGATTGTGGGAAACACACCTGACCAAACGAAAGCTGAAGGAGAGAGCGTAAGAGACAAAGCATCAGCCTTAAAACTTCTAAATTCCAATGAAAAAGAAAACCAAGCACAGAAAGAAGAAGGCTCAACAAAACAGACTGTCTACATACGCATCCCATTATCGGACATGGTTAGCAATGAGTCTACCTCTGGAGGGAAAGATGAGGAAAAAGGAAAAACAGGAAACAAACCAACATATAAATTAATTGACAGATATCCTAAACTtcctcaaatacagaaaaaaaaatcgtacattatattttacaacCCTAAAACCAGGAATGCTATGTGCACGTATGAGATATTAAACAGAGATACATTATCTAAACACATAAACccatcaaatgaaaaaaataatgaaaacaatcaAGCTAAGACAGAACTTAAAGAAAATACTGACAGCAAGCGAGAATCCGATCAAAGAGACTTGAACCAAATGACTCGAGGTCATCTCGCTACAGCTGCCAATCACAGGTGGTGTCGGGAAGCCTATCAGGATGTCAATATTGACAACAACATGGCACCACAGCATTTAGCCCTAAACAATGGCATCTGGAAAGCGCTTGAGAATAACTGTCAGACTATATTCGAAGACGAAAATAATAACATCCGCAATGTCCATGTGTACACTGGACCACTTTACAATTATAAGGAAACAAAAAAGAGCTCAGAAAAACCAAGATTTTGGCACGACAAAGAAGTGCCGACTCACTTCTTCAAGGTGATAATAAAGGAGCATGAAGAGGGGACTGTAAACATGGAGTGCTATAAGATGCCTAATACAGATAATCCAAAAGACACGGATTTGAATAAATACGaagtgcaaataaaacaaattgagaACGAATCTGGGTTGAAGTTTACAGAAAACGGCTGTCCTGAGGGAGAGATAGACAGTACTAGAACTGTGAAATGGGAGGGTAGAGATGCAAAGGGAAACGAGTGTTCTGCTAAGATAACAGTAGGAATAAGCACACCACTTGCTGATCATAATCAATTTGCCTACATCTGAGCATGTACAGTTCTTTACTGCATTACCCGTGattagtggtggaaagagt

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0060231 mesenchymal to epithelial transition biological_process
GO:0061053 somite development biological_process
GO:0007417 central nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052924 True 4089 lncRNA 0.39 1 6046988 6051076

Neighbor

gene id symbol gene type direction distance location
XLOC_026044 mcoln1b coding downstream 11222 5991765 ~ 6035766 (-)
XLOC_026043 BX284638.2 coding downstream 82431 5882130 ~ 5964557 (-)
XLOC_026042 pkn1b coding downstream 217487 5778954 ~ 5829501 (-)
XLOC_026041 CABZ01064408.1 coding downstream 296961 5744408 ~ 5750027 (-)
XLOC_026040 CABZ01064405.1 coding downstream 321370 5718913 ~ 5725618 (-)
XLOC_026046 NA coding upstream 22415 6073491 ~ 6095821 (-)
XLOC_026047 si:ch73-144l3.1 coding upstream 127271 6178347 ~ 6191950 (-)
XLOC_026048 NA coding upstream 152660 6203736 ~ 6211960 (-)
XLOC_026049 NA coding upstream 169005 6220081 ~ 6228146 (-)
XLOC_026050 NA coding upstream 186022 6237098 ~ 6240065 (-)
XLOC_026039 CABZ01064402.1 non-coding downstream 349256 5697609 ~ 5697732 (-)
XLOC_026035 NA non-coding downstream 517008 5526109 ~ 5529980 (-)
XLOC_026034 FP016234.1 non-coding downstream 523976 5514677 ~ 5523012 (-)
XLOC_026052 NA non-coding upstream 257617 6308693 ~ 6376938 (-)

Expression


Co-expression Network