XLOC_026047 (si:ch73-144l3.1)


Basic Information

Item Value
gene id XLOC_026047
gene name si:ch73-144l3.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6178347 ~ 6191950 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050940
GAGGAGCTCAAGACAGCACTGAAGTCCTTGAAAGAAAAACTTAAACACAATGAAGATGTTAAAGGGGAGTTAGAGAAAACTGTTCAACACATCAAGACTCAAGCCAACCACACCGAACATCAGATTATACACCAATTTGACAAGCTTCATCAGTTTCTCCGAGATGAAGAAAAGGCTACAATCACTGCACTGAGGAAGGAAGAAGAGCAAAAGAAGCAGATGATGAAGGTGAAGCTGGAGGagataaacacacacatctcAGCTCTTTCACACACGATCAGAGACACGGAGGAGATGCTGAAAGCCAAAGACGTCTGCTTTCTGAAGGAGTTTCCAGGCTCAATGAAAAGGTGAGTGATCTGCTGCTCTCTCTGCTTCTGAAGCCAAAGCCACTGCAGCTCTGACTCCTGAATGTTCTTCTAGAGTTCAGATCTCACAGCCCAATCTACAGATGCCCTCTGGAGCTTTGATTCATGTGTCTCAGTTCTTGGGGAACCTGCAGTACAAAGTTTGGAGGAAGATGCAGGACATCATCCAGTACTCTCCTGTGATTCTGGATCCAAACACTGCTCATCCACGTCTCATAGTGTCTGATGATCTGAGCACTGTCAGTTACAGCTGGGACGAACAACCACTTCCTGATAATCCGGAGAGATTCGATATCTATGAGTGTGTTTTGGGTTCAGTGGGGTTTAAAACCGGGAACTGCAGCTGGGATGTGGAGATTAGAGGAAGTGAATGCTGGAGTCTTGGAGTAACTACGGCATCAAACCAGAGAAAGGGCCGTGAGTTCTGTAACGCCGACGTCTGGAGGGTGACCTACGATCCGTACAATCAGCTCGGGTCTGATACTTCTGTCGAGCAGGATCTTGAGCGTGTGAGAGTGTATCTGGATTATGATAGTGGAACAGTGTCTTTCTCTAATCCCGTAAATAACAGACTTCTACACACATTCACAACTACCTTCACAGACACCGTCTTTCCGTTCTTCTGTAATCTTGATGAAGTTAAATCTCTAAAGGTTTTACCAGTTAAACTGTAGTAACACATAAAATAAGCCACAGAAATAAAATCTGATaattaaactgtaaatatttcaattaatctacaaccccaaatcagaaaaagttagaacagtatggaaaacgcaaataaaaaagtagtgatttctaaattaactttgacttgtgttttattactgtaacgaggagactgacacggaggtatccattatgcagtatttattaatcacactctTACTCAAACACTCAACAtgcacaaaggtgcaaacacacatcaacagtagTAATAATGGTTTCAAGGCTGGCGGtagacagacacagagtgatttaccaggcatgagtcaaaggcaggcggcgtgattcagagtccgtgtatcaggcttgggtcgagggcaggcagcgagtatcagagtccgtatatcaggcttgggtcgtgggcaggtagaaggcaaagcagagtcagagacgggctggagtaatacacaggagatcaggcaggatataacgctcagtaatgctggccggggctaaacaagacttgaCTGaatgtttgagtgcggcttataaagggtacgtgggtcattaactGGAATGTGATTCAGGTGTGCACGATCAGTgtaaatggatgatgtaatgctagaagtcaggagatggtggcctctgctggccagcgaggggaatgactgggaccgagtcggtgacaattacagacaatacaacaaacattattctaatagtttttttctttcccaaaataaacacgtattccaattttggttcttgcaacacatttcaaaaaaagttggagcataaaagcatttaccactttgtaatttgttgccattccttttcacaacactcaAAAGACGTTTATGAACCGAAggcaccaagtgatgaagtgtttcaggtgtattGTTGTCCTATTTTTCCTGCAAATAAGTCCTAAGATGGGCAACAGTATGGGGTCTTCACGGTCatattttgcacttcaaaatgcaccacacattctctgttggagacaggtcaggactgcaggcaggccagtcaagtacctgtatcctcttcctccacagccaggactttgtaaagAGTGCAGAATGTGGTCCcgcattgtcttgctgaaatataCATGGGTgttcctggaaaagaaggcagcagattgtgctccaaaatctcgaTGTACTTTTTAGCATTAATGGTGCATCACAGAAGGGCACTggcacaaccccataccatgacagagcctggcttttggacttgttgctggtaacagtcctGAAGATCCATTTCTGCTTTGGTCCGGGGGACACAGTGTCTATTTCTCCCCAAAACATACCTGAAAtattgattcatctgaccacagtacacattttccATCTATGATGGTCCATCTCAGAGACCTCCAACCCCAGAGAAGTCGAAGGCACTTCTCAACACTGTTAACATATGGCTTCCTTTTGCCAactgtacagttttaactggcatttgtcagttcaaatcataattacaatcacctgttgacatcacctgtttcaaatcataTCATTATTTGACTTTACCTGATTGCTAgacctaaattgctcctgtcacAACTGTTTTGCAGGTCTGTATGAAaggaaaaaatgtatatttgcaaataaaatgAAGTTAATCAGACAAACCATGAACTTTCtagttcatattgtctgcaatgaaatgcaagtaaatttggaaatcatgacttctttttatttatttatttgcgttttTCATCCTGTTGCAacgttttctgatttggggttgttaCATATGAAAAGTGtaaatttagaagaaaaaaaatacattccaCAATTTATCTTTGTATATTTAATGCTCTCTACGTGTGCTATTAAGATTTTTTACAATTTACCACTTCTAAAGACGTAATTACAAGCTTGTCACATACAAGTGCCTTgttgtcaaaaataaatgttaaaatacagcactgcagagttttgtttcatctcaaaaacatgtattgttaaacaataaaatattaaagacaCTTCTGTCTTATGTTTTTTAATAGTCACCATTGTTGAGATTCTTGTTGATGTGTCTGATTCTGAAGCTGTAAAATTTTtcgtaaataaaaattttttatcaaattttctCAATGGAGAGCCACATTACTGCCCTTTACAACATAaaacgaataaaaaaaaatcaaccacaTTATCAAGTTGATAACAAAGGCAAGGCAATGCAAGCTTATTTTTATAAATCAGCACACTAGGTGGAGGTAGTTATTACTATACCATGAGCACTAGCTAACTGATGCCACTCACATTCGAGCAAGATAAAAGGTTAAAACAAAGCCAAGGCAATGCAAGCTTATTTATATAAATCAGCCCACTAGGTGGAGGTAGTTATTACTATATCATGAGCACTAGCTAACTGATGCCACTCACATTTGAGCAAGATAAAAGGTTAAAgcaggtgtccctgcaggatttagctccaacttgcctcaacacacttgcctggatgtttcaagtatacccaagaccttgattagcttgttcgggtgtgtttgattagggttggagctaaaatctctaGGACACCGGGCCTCATATGGgattagctaaaataaaataatttaacaattcTCTTTTTTTCACAGCATTGTTCTGTGGTTGTATGTGGATGACCTGTTTTGCAGCAGTCTGGCAAGTCTCTTGTTTTAAATCAGTGATTCGG
>TCONS_00050941
TGACAAAGACTTGGAGAAAGAAGACGAATGCTTTCAAGCTGGATTTTGGAGAAACTTGTTTCTGATTCTTGTGGTTGTTAGCTTTGTTAAACCATCGTTTAAGATTTCTACATTTCTGAAACTAAAACAGTATGGCTTCGCTATCTGAAGATTTTTCTTGTGTGTCGTGACATCTTCAAGTCTCCTCTTATTTTATCTTGTAGTCACAGTGTGTGCAAAAAGTGTCTTCAGCAGTTCtggataaagaaaaaaattcaagagtgtcCCGTCTGTAAGAGAAGATCTTCAAAAGATGATCCTCCAATAAACAGTGATAAAAATCCAGTGTAAAATGTTGCGGAAGGAGAAAAAAGAGAAACGCTCATCAGGATCAGAGGAGATCTGCAGTTTGCACAAAGAGAAACTCCAACTCTTCTGTGTGGAGGACGAACAGCTGGTGTGTTTAGTGTGCAGAGatgcaaaacaacacaacaaacacaaattCAGACCCATCAGTGAAGCGGTTTCATCACACAAGGAGGAGCTCAAGACAGCACTGAAGTCCTTGAAAGAAAAACTTAAACACAATGAAGATGTTAAAGGGGAGTTAGAGAAAACTGTTCAACACATCAAGACTCAAGCCAACCACACCGAACATCAGATTATACACCAATTTGACAAGCTTCATCAGTTTCTCCGAGATGAAGAAAAGGCTACAATCACTGCACTGAGGAAGGAAGAAGAGCAAAAGAAGCAGATGATGAAGGTGAAGCTGGAGGagataaacacacacatctcAGCTCTTTCACACACGATCAGAGACACGGAGGAGATGCTGAAAGCCAAAGACGTCTGCTTTCTGAAGGAGTTTCCAGGCTCAATGAAAAGAGTTCAGATCTCACAGCCCAATCTACAGATGCCCTCTGGAGCTTTGATTCATGTGTCTCAGTTCTTGGGGAACCTGCAGTACAAAGTTTGGAGGAAGATGCAGGACATCATCCAGTACTCTCCTGTGATTCTGGATCCAAACACTGCTCATCCACGTCTCATAGTGTCTGATGATCTGAGCACTGTCAGTTACAGCTGGGACGAACAACCACTTCCTGATAATCCGGAGAGATTCGATATCTATGAGTGTGTTTTGGGTTCAGTGGGGTTTAAAACCGGGAACTGCAGCTGGGATGTGGAGATTAGAGGAAGTGAATGCTGGAGTCTTGGAGTAACTACGGCATCAAACCAGAGAAAGGGCCGTGAGTTCTGTAACGCCGACGTCTGGAGGGTGACCTACGATCCGTACAATCAGCTCGGGTCTGATACTTCTGTCGAGCAGGATCTTGAGCGTGTGAGAGTGTATCTGGATTATGATAGTGGAACAGTGTCTTTCTCTAATCCCGTAAATAACAGACTTCTACACACATTCACAACTACCTTCACAGACACCGTCTTTCCGTTCTTCTGTAATCTTGATGAAGTTAAATCTCTAAAGGTTTTACCAGTTAAACTGTAGTAACACATAAAATAAGCCACAGAAATAAAATCTGATaattaaactgtaaatatttcaattaatctacaaccccaaatcagaaaaagttagaacagtatggaaaacgcaaataaaaaagtagtgatttc

Function

symbol description
si:ch73-144l3.1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-96 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000103154

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050940 False 3743 mRNA 0.41 3 6178347 6189360
TCONS_00050941 True 1614 mRNA 0.42 5 6180920 6191950

Neighbor

gene id symbol gene type direction distance location
XLOC_026046 NA coding downstream 82526 6073491 ~ 6095821 (-)
XLOC_026045 NA coding downstream 127271 6046988 ~ 6051076 (-)
XLOC_026044 mcoln1b coding downstream 142581 5991765 ~ 6035766 (-)
XLOC_026043 BX284638.2 coding downstream 213790 5882130 ~ 5964557 (-)
XLOC_026042 pkn1b coding downstream 348846 5778954 ~ 5829501 (-)
XLOC_026048 NA coding upstream 11786 6203736 ~ 6211960 (-)
XLOC_026049 NA coding upstream 28131 6220081 ~ 6228146 (-)
XLOC_026050 NA coding upstream 45148 6237098 ~ 6240065 (-)
XLOC_026051 BX004785.2 coding upstream 86802 6278752 ~ 6281503 (-)
XLOC_026052 NA coding upstream 116743 6308693 ~ 6376938 (-)
XLOC_026041 CABZ01064408.1 non-coding downstream 428320 5744408 ~ 5750027 (-)
XLOC_026040 CABZ01064405.1 non-coding downstream 452729 5718913 ~ 5725618 (-)
XLOC_026039 CABZ01064402.1 non-coding downstream 480615 5697609 ~ 5697732 (-)
XLOC_026056 NA non-coding upstream 333748 6525698 ~ 6529154 (-)

Expression


Co-expression Network