XLOC_026048


Basic Information

Item Value
gene id XLOC_026048
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6203736 ~ 6211960 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050942
AAGTGAATCACTGGATATGGGGAGCGCGGGGCCTTCTGTACCTTGAGGGGACCAATGCACCTTGTATAGTCCACATATAGGGCGGATCGGTACTGctgttatttttacaaaaaaacatgCTTGACTGCTTTTCTTTCCTGTGTTAACTGCAAAAGCCCTAAAAAGCCAAACCTGTAACCAAAGCTGTACAGACACTGGCCAGGGTTGCTGAATAGCTGACTACACTGAATTGAAAGAAAATGGATCATCCTTACATCTCTCTTGTTTTGCTCATATTCATGGCCTGTTCATCGAGTGCCGGGAAAACATTCTGGACTCATCAAGGAACTCGTTGTATTGAAGACTGTAAGGCCTACTGGGGTGCATACAAGTGCAAGACTATTGATAAAGATGGACAGTGCCAGACAATGTACTGTTCACCTAAAGAAAACATAGACTACTGGGGCAGGCAGTGCAGTGAAACCAGTAAGTGCTGGAAGCGTGGTAAAAACTATTCCTCCAAAACTGGTTTCTTACATTGGGGATACTGTGGGCTGGTAATGGACGACAACAACCATTATGGATCTTACACAGATGCACAGTGTTATGACAACTGTGAACAAAGAGGTGAATCCTACTATTGGTGCCATACTGAACAGGGTTGGGATTACTGTTCACCTAATGAAAACACGGATTACATGAACAAGCAGTGTAAAGAAGACAGGCCATGCGCAAAACGCAATAGCAAGTACTACTGGTGTGCAGTGGAGGAAACCTGGGGTTACTGTGGCCTCGTGAAGCCAAAGATGTTCTACTACTGGACTTATGAAAATTCTGTTTGCATTGACGTATGCCATTATTATGAGAGAGGAGATTACTACTGGTGCCACACAGACAAAGGCTGGGACTACTGCTCTCCAGAAGTGGATGTAACTTATAAAGGCACACCATGTCGCTCAGATCACTTCTGTGGTTTACATGGCTATAGTTACAACTGGTGCTGGACCTCAGGATCAGGTTATGATTACTGTGGGCCCATTGAATCTGCAGAGTGCTCCTACGTCCCCTCTACACATCTCAGGAGGGGAGCCGATGACAACAACCCCCAGAAAATTGTGATATGCACAAAGGTAGATAAAGGAAACAAGAAGATAACCATCTTTACCGCTAACCCAGATCCTGATGACATTGCTGATGGAAGCAAATTTAAACATGAGGTGGAAAACTTAGTCAGTCAGTGGGACAATGGGTATTTAGTGGACCAGGCACGTTCTAATCTGTTACGCTCTGCTGATGTCCGCATTGATATGCAGGGGCTTATAAACCGTAACAATCTGAGATACTACAATCTGCAGGTCCAGCGAAACGTGCCACGGAGGGCTGGTGAAAGCACCACCGTTTCCCAGATCATCGTACCTCCGGGAGTCCCGGCTCGGTACATTCGAAGAGCCTTTATCGAAAGCTTAAGGATGAGAGCGCAGGTTTTTATTGATGTTTCAACGTCAAATCTGGACCCTCACCATTAA
>TCONS_00052428
TGTTATGACAACTGTGAACAAAGAGGTGAATCCTACTATTGGTGCCATACTGAACAGGGTTGGGATTACTGTTCACCTAATGAAAACACGGATTACATGAACAAGCAGTGTAAAGAAGACAGGCCATGCGCAAAACGCAATAGCAAGTACTACTGGTGTGCAGTGGAGGAAACCTGGGGTTACTGTGGCCTCGTGAAGCCAAAGATGTTCTACTACTGGACTTATGAAAATTCTGTTTGCATTGACGTATGCCATTATTATGAGAGAGGAGATTACTACTGGTGCCACACAGACAAAGGCTGGGACTACTGCTCTCCAGAAGTGGATGTAACTTATAAAGGCACACCATGTCGCTCAGATCACTTCTGTGGTTTACATGGCTATAGTTACAACTGGTGCTGGACCTCAGGATCAGGTTATGATTACTGTGGGCCCATTGAATCTGCAGAGTGCTCCTACGTCCCCTCTACACATCTCAGGAGGGGAGCCGATGACAACAACCCCCAGAAAATTGTGATATGCACAAAGGTAGATAAAGGAAACAAGAAGATAACCATCTTTACCGCTAACCCAGATCCTGATGACATTGCTGATGGAAGCAAATTTAAACATGAGGTGGAAAACTTAGTCAGTCAGTGGGACAATGGGTATTTAGTGGACCAGGCACGTTCTAATCTGTTACGCTCTGCTGATGTCCGCATTGATATGCAGGGGCTTATAAACCGTAACAATCTGAGATACTACAATCTGCAGGTCCAGCGAAACGTGCCACGGAGGGCTGGTGAAAGCACCACCGTTTCCCAGATCATCGTACCTCCGGGAGTCCCGGCTCGGTACATTCGAAGAGCCTTTATCGAAAGCTTAAGGATGAGAGCGCAGGTTTTTATTGATGTTTCAACGTCAAATCTGGACCCTCAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0010872 regulation of cholesterol esterification biological_process
GO:0048731 system development biological_process
GO:0010873 positive regulation of cholesterol esterification biological_process
GO:0006600 creatine metabolic process biological_process
GO:0006601 creatine biosynthetic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0046889 positive regulation of lipid biosynthetic process biological_process
GO:0006979 response to oxidative stress biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0070328 triglyceride homeostasis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:0015918 sterol transport biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0043691 reverse cholesterol transport biological_process
GO:0055088 lipid homeostasis biological_process
GO:0055090 acylglycerol homeostasis biological_process
GO:0055092 sterol homeostasis biological_process
GO:0040007 growth biological_process
GO:0030301 cholesterol transport biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0034370 triglyceride-rich lipoprotein particle remodeling biological_process
GO:0034372 very-low-density lipoprotein particle remodeling biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0032994 protein-lipid complex cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:1990777 lipoprotein particle cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0034358 plasma lipoprotein particle cellular_component
GO:0042627 chylomicron cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0071813 lipoprotein particle binding molecular_function
GO:0071814 protein-lipid complex binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0060228 phosphatidylcholine-sterol O-acyltransferase activator activity molecular_function

KEGG:

id description
ko00910 Nitrogen metabolism
ko00250 Alanine, aspartate and glutamate metabolism
ko00220 Arginine biosynthesis
ko00430 Taurine and hypotaurine metabolism
ko03230 Viral genome structure
ko04310 Wnt signaling pathway
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050942 False 1505 lncRNA 0.45 2 6203736 6211960
TCONS_00052428 True 918 lncRNA 0.46 1 6203742 6204659

Neighbor

gene id symbol gene type direction distance location
XLOC_026047 si:ch73-144l3.1 coding downstream 11786 6178347 ~ 6191950 (-)
XLOC_026046 NA coding downstream 107915 6073491 ~ 6095821 (-)
XLOC_026045 NA coding downstream 152660 6046988 ~ 6051076 (-)
XLOC_026044 mcoln1b coding downstream 167970 5991765 ~ 6035766 (-)
XLOC_026043 BX284638.2 coding downstream 239179 5882130 ~ 5964557 (-)
XLOC_026049 NA coding upstream 8121 6220081 ~ 6228146 (-)
XLOC_026050 NA coding upstream 25138 6237098 ~ 6240065 (-)
XLOC_026051 BX004785.2 coding upstream 66792 6278752 ~ 6281503 (-)
XLOC_026052 NA coding upstream 96733 6308693 ~ 6376938 (-)
XLOC_026053 jpt1b coding upstream 168200 6380160 ~ 6417328 (-)
XLOC_026041 CABZ01064408.1 non-coding downstream 453709 5744408 ~ 5750027 (-)
XLOC_026040 CABZ01064405.1 non-coding downstream 478118 5718913 ~ 5725618 (-)
XLOC_026039 CABZ01064402.1 non-coding downstream 506004 5697609 ~ 5697732 (-)
XLOC_026056 NA non-coding upstream 313738 6525698 ~ 6529154 (-)
XLOC_026058 FP016106.1 non-coding upstream 345000 6556960 ~ 6597195 (-)

Expression


Co-expression Network