G677277


Basic Information

Item Value
gene id G677277
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15326331 ~ 15326560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU771492
cctttccctccatttggcaaatataaccataactctatcctcccgattcctgcttacaagcaaaaatgaaagcaggaagcaccagtgactcggtctataaaaaagtgttcagatgaagcagatgctaagctacaggactgttttgctagcacagactggaacatgttctgggattcttccgatggcattgaggagtaccacacatcagtcactgactttatcaataagtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU771492 True 230 lncRNA 0.43 1 15326331 15326560

Neighbor

gene id symbol gene type direction distance location
nkx2.1b nkx2.1b coding upstream 49400 15274628 ~ 15276931 (+)
LOC110529464 LOC106571299 coding upstream 66000 15258311 ~ 15260331 (+)
LOC110529462 LOC106571241 coding upstream 188146 15135212 ~ 15138185 (+)
LOC110529460 NA coding upstream 202281 15119099 ~ 15124050 (+)
LOC110529458 LOC106571242 coding upstream 221223 15039114 ~ 15105108 (+)
crnkl1 LOC106571265 coding downstream 150394 15476954 ~ 15483621 (+)
LOC110529475 LOC106571272 coding downstream 528062 15854622 ~ 15888522 (+)
LOC110529476 LOC106571274 coding downstream 566016 15892576 ~ 16023051 (+)
trnaa-ugc-22 NA coding downstream 637009 15963569 ~ 15963643 (+)
LOC110529479 nt5e coding downstream 909207 16235767 ~ 16246138 (+)
G677079 LOC102780604 non-coding upstream 2590 15293713 ~ 15323741 (+)
G677014 NA non-coding upstream 159555 15166409 ~ 15166776 (+)
G677008 NA non-coding upstream 169699 15156423 ~ 15156632 (+)
G677007 NA non-coding upstream 170811 15155225 ~ 15155520 (+)
G676924 ndufaf7 non-coding upstream 210398 15111645 ~ 15115933 (+)
G677279 NA non-coding downstream 1105 15327665 ~ 15328044 (+)
G677280 NA non-coding downstream 2025 15328585 ~ 15328825 (+)
G677281 NA non-coding downstream 2827 15329387 ~ 15329625 (+)
G677286 NA non-coding downstream 5913 15332473 ~ 15332710 (+)
G677288 LOC100194703 non-coding downstream 7385 15333945 ~ 15334167 (+)
G676919 NA other upstream 219188 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 567407 14749575 ~ 14758924 (+)
G676226 NA other upstream 963360 14360577 ~ 14362971 (+)
G675705 NA other upstream 1470049 13855660 ~ 13856282 (+)
G678417 LOC106571283 other downstream 1058242 16384802 ~ 16385945 (+)
LOC110529493 LOC106571284 other downstream 1060890 16387411 ~ 16390869 (+)
LOC110529505 LOC106571335 other downstream 1566599 16893102 ~ 16921697 (+)
G681909 NA other downstream 3837376 19163936 ~ 19165640 (+)
G682611 NA other downstream 4402273 19728833 ~ 19729671 (+)

Expression


Co-expression Network