XLOC_026049


Basic Information

Item Value
gene id XLOC_026049
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6220081 ~ 6228146 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052429
AGGGACAGACACGTGACGCTCATCAACAGTCCTCAGCTGCTCCACACAAACATCTCAGATGACCAGATCACACAGACGGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTGGTGGTTCTGCTCCTCCAACATCAGCAGTGCTCAGCGGAAGATCAAGAGcgtgtggagaagctgcaggactCTTTCTCTGAGCGTCTTTTTCAACACACCATGGTGCTCAGCACACAAGAGTCCACTGAACCCAATGAGATCCTGCAGAAAATCATCCAGACGTGCTCAAACAGACACTTCAGTCTTCAGAGAAGCAGCTCTGCTGATGATCTTCTGGAGGCCTTTGAGGACATCGAGCAGAGCAATGATGGACGGTACCTGATTTGTGCTCAATATGAAGCTTCACAGTGTTTTACAGTGGATAATCAGATCACAAGAAGAGGTTCTGAGGTAAAAAGAGAGATGTATAGTGTTTTCTCCACCTTACTAAGAGAATCTTCTTCTTCTCTTTCAGACTGTGAGAAGCTGAATGTGGTAGTGTGCGGGAGCAACGGCTCGCTGAAATCTTCCATCTCAGAGCTGATACCACAGCACACAATCAGAAGATCAGGGAGTGTGAGCACAGACGTGGATCTTTATGGTCATCAGATCAATGTGCTGGAGCTTCCAGCTTTGTTCAAGACTGAGCTCTCGGAGGAGGAAGTGATGCGACAGACTCTCGACTGTGTGTCTCTCTGTCAACCTGGCGTTCATGCTTTTCTCTTCATTATTTCCGATGCTCCACTGACCGATGAGGACAAAGCAGAAATGGAGGTGATTCAGAGGGTTTTCAGCTCCAGAATCAACAAACACCTCATAACCCTCATCATGCAGAATTCAGAGCATCAGACAGCTGAACTCAATGACGAAACACAGGCTGTCACTGAGAGTTTTGGAGGACGACATCATATCTTTGGTCCCACCACTCAGGTGTCCATGTTGATGGAGAACATTGAGCAGATGCTGGAAGAAAACAGGGAAGAGGTTTACTCAACAGACACGTTTCTTGAGGCACAAATGAAAAAACTGCTCCACTATGAAGACATGAAGAAGAAACTTCATTCACTAGAGACAAATTTACTGTCGCAAGAGTACAATCCAGAAAGGTTACCCTGTCCAGTGGAGACTGAAAATGAACTGAGGATAGTCCTGTTGGGAAAAAGTGGAGTGGGTAAAAGTGCAACTGGAAATACCATCTTAGAAAGATATGTGTTTAAAGCAGAAACATCTCAAGAGTCTGTTACTCAAGAGAGTCAAAGCGAAACTCGAGAAATCAATGGTCGACACATTACTGTAATCGATACGCCAGGACTGTTTGATACTGAACTCACTAATGAAGAAATCCAGAAAGAAATCAGCAACTGCATCTCCATGATTCTGCCTGGACCACACGTGTTCATCATCGTGCTCAATTTAGGACAGAGATTCACTCAAGAAGAGGCTAAATCAGTGGAGATCATCCAAGAGACATTTGGGGAAAACTCTTTAATGTACACCATGGTGCTCTTCACCAGAGGAGATTATTTAAGAAACAAAACCATTGAACAGTGTTTGGCGAAACCTGGATCTCCTCTAATGAAGCTGATTGAAGCTTGTGGACACAGATTCCATGTGTTCAACAATAATGAGACTGAAGACCGAACACAAGTGGCTGATCTTCTAGAGAAGATAGACAACATGTTAAAAGCAAACGGAGGAAGTTTCTACTCTTGTAAGATGTTCAGAGAAAAAGAAGAACTGATAAAGAAACACGAGGAAGAGATAACAAGAGAACGAGAGAAGTTTACgattgaaattaaacaaattaagaaaGAAAAGCGAGAACTTTGGACCAACGATGAGACAGAAACAGACAGTCAATTGGACAGAAGAGAAAAAGTGAGGAAGAAAAAAGATGAGGAGTGTCACAAGGAGAAGATAGAAGAGGAGCTGGATGAAGATGAAATTGTGAGTAAAGAAGAAGAGGATGAGATGgagaaagaaaaagaagaacagGAGAAACTGAAACTAGAAGAAATACAAAACCAGGCTGATGTTGAACTGTATCAGACTCTCAGGATTAAAATTAAAGAACGAGAGAgaatagaaagagagagacaagAACAACCCCAGGATTCAGATAAACAGAAAAAAGGAATAAAGACTTTAGAAGAGAAACTGAATCTCCTTGATCATCAAGATGAGCTGAAGAGAAGACAATTAGAGTTGAGGGAGGACTATGGCAAGGAGAAAAAGATGAAGAAAATCTAT
>TCONS_00052925
ATGAAAAAatgtgGTCCAGTGGAGACTGAAAATGAACTGAGGATAGTCCTGTTGGGAAAAAGTGGAGTGGGTAAAAGTGCAACTGGAAATACCATCTTAGAAAGATATGTGTTTAAAGCAGAAACATCTCAAGAGTCTGTTACTCAAGAGAGTCAAAGCGAAACTCGAGAAATCAATGGTCGACACATTACTGTAATCGATACGCCAGGACTGTTTGATACTGAACTCACTAATGAAGAAATCCAGAAAGAAATCAGCAACTGCATCTCCATGATTCTGCCTGGACCACACGTGTTCATCATCGTGCTCAATTTAGGACAGAGATTCACTCAAGAAGAGGCTAAATCAGTGGAGATCATCCAAGAGACATTTGGGGAAAACTCTTTAATGTACACCATGGTGCTCTTCACCAGAGGAGATTATTTAAGAAACAAAACCATTGAACAGTGTTTGGCGAAACCTGGATCTCCTCTAATGAAGCTGATTGAAGCTTGTGGACACAGATTCCATGTGTTCAACAATAATGAGACTGAAGACCGAACACAAGTGGCTGATCTTCTAGAGAAGATAGACAACATGTTAAAAGCAAACGGAGGAAGTTTCTACTCTTGTAAGATGTTCAGAATGGCGACGATGATGGGTGTAGTGGATAAACTAAACAGAGAAAAAGAAGAACTGATAAAGAAACACGAGGAAGAGCTAGAAGAAATACAAAACCAGGCTGATGTTGAACTGTATCAGACTCTC
>TCONS_00050943
AAGACGGATGAGACCTTGACAAGCAGGTAACTAGAATGCTAACACGAGTTGAGGACTTCTGAAGCTTTTAGAGGATGAACAGACAGAATTAAGAGGATGATCAGCTGAAGACGAAGGACAGATGGAAGAATTAAATATTGATATGTACAGCAGTGAAAGCAGAGTGGGGTGTAGTAGTCCATTTTGGGGTCGTCCTAACATGAGTGATCTGAGGATCGTTCTTCTGGGGAAAAGCGTGTCAGAAAACAGCGAGGTGGGAAACTTCATCTTGGGCCGATCAGCATTTGACAGTGAAGCTCCTCCAGGTGTTGTGGAGAGAGTCGGAGGAAGACTGAGGGACAGACACGTGACGCTCATCAACAGTCCTCAGCTGCTCCACACAAACATCTCAGATGACCAGATCACACAGACGGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTGGTGGTTCTGCTCCTCCAACATCAGCAGTGCTCAGCGGAAGATCAAGAGcgtgtggagaagctgcaggactCTTTCTCTGAGCGTCTTTTTCAACACACCATGGTGCTCAGCACACAAGAGTCCACTGAACCCAATGAGATCCTGCAGAAAATCATCCAGACGTGCTCAAACAGACACTTCAGTCTTCAGAGAAGCAGCTCTGCTGATGATCTTCTGGAGGCCTTTGAGGACATCGAGCAGAGCAATGATGGACGGTACCTGATTTGTGCTCAATATGAAGCTTCACAGTGTTTTACAGTGGATAATCAGATCACAAGAAGAGACTGTGAGAAGCTGAATGTGGTAGTGTGCGGGAGCAACGGCTCGCTGAAATCTTCCATCTCAGAGCTGATACCACAGCACACAATCAGAAGATCAGGGAGTGTGAGCACAGACGTGGATCTTTATGGTCATCAGATCAATGTGCTGGAGCTTCCAGCTTTGTTCAAGACTGAGCTCTCGGAGGAGGAAGTGATGCGACAGACTCTCGACTGTGTGTCTCTCTGTCAACCTGGCGTTCATGCTTTTCTCTTCATTATTTCCGATGCTCCACTGACCGATGAGGACAAAGCAGAAATGGAGGTGATTCAGAGGGTTTTCAGCTCCAGAATCAACAAACACCTCATAACCCTCATCATGCAGAATTCAGAGCATCAGACAGCTGAACTCAATGACGAAACACAGGCTGTCACTGAGAGTTTTGGAGGACGACATCATATCTTTGGTCCCACCACTCAGGTGTCCATGTTGATGGAGAACATTGAGCAGATGCTGGAAGAAAACAGGGAAGAGGTTTACTCAACAGACACGTTTCTTGAGGCACAAATGAAAAAACTGCTCCACTATGAAGACATGAAGAAGAAACTTCATTCACTAGAGACAAATTTACTGTCGCAAGGTCCAGTGGAGACTGAAAATGAACTGAGGATAGTCCTGTTGGGAAAAAGTGGAGTGGGTAAAAGTGCAACTGGAAATACCATCTTAGAAAGATATGTGTTTAAAGCAGAAACATCTCAAGAGTCTGTTACTCAAGAGAGTCAAAGCGAAACTCGAGAAATCAATGGTCGACACATTACTGTAATCGATACGCCAGGACTGTTTGATACTGAACTCACTAATGAAGAAATCCAGAAAGAAATCAGCAACTGCATCTCCATGATTCTGCCTGGACCACACGTGTTCATCATCGTGCTCAATTTAGGACAGAGAT
>TCONS_00050944
aacaaaacaaagattaaaaaaatcattttttacagtttgtctGCTCCTGCAGCCTGATCGGATCAGATACACAGAAACTGGTTTTTATCTTTTTAGCGTCACCAACTCTTCCCGCGGATATAGGTTTCTTCCTGATTCATGCTGACAACAAATTAAGTAACACAGAAGACGGATGAGACCTTGACAAGCAGCAATTAGGTAACTAGAATGCTAACACGAGTTGAGGACTTCTGAAGCTTTTAGAGGATGAACAGACAGAATTAAGAGGATGATCAGCTGAAGACGAAGGACAGATGGAAGAATTAAATATTGATATGTACAGCAGTGAAAGCAGAGTGAGTGATCTGAGGATCGTTCTTCTGGGGAAAAGCGTGTCAGAAAACAGCGAGGTGGGAAACTTCATCTTGGGCCGATCAGCATTTGACAGTGAAGCTCCTCCAGGTGTTGTGGAGAGAGTCGGAGGAAGACTGAGGGACAGACACGTGACGCTCATCAACAGTCCTCAGCTGCTCCACACAAACATCTCAGATGACCAGATCACACAGACGGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTGGTGGTTCTGCTCCTCCAACATCAGCAGTGCTCAGCGGAAGATCAAGAGcgtgtggagaagctgcaggactCTTTCTCTGAGCGTCTTTTTCAACACACCATGGTGCTCAGCACACAAGAGTCCACTGAACCCAATGAGATCCTGCAGAAAATCATCCAGACGTGCTCAAACAGACACTTCAGTCTTCAGAGAAGCAGCTCTGCTGATGATCTTCTGGAGGCCTTTGAGGACATCGAGCAGAGCAATGATGGACGGTACCTGATTTGTGCTCAATATGAAGCTTCACAGTGTTTTACAGTGGATAATCAGATCACAAGAAGAGGCGAGTATGATGAAATCTGATGTTTTATCGATATATGAACACT

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000089713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052429 False 2289 lncRNA 0.43 7 6220081 6226026
TCONS_00052925 False 747 lncRNA 0.40 4 6220276 6221597
TCONS_00050943 False 1703 processed_transcript 0.46 6 6221205 6227981
TCONS_00050944 True 955 processed_transcript 0.45 3 6225542 6228146

Neighbor

gene id symbol gene type direction distance location
XLOC_026048 NA coding downstream 8121 6203736 ~ 6211960 (-)
XLOC_026047 si:ch73-144l3.1 coding downstream 28131 6178347 ~ 6191950 (-)
XLOC_026046 NA coding downstream 124260 6073491 ~ 6095821 (-)
XLOC_026045 NA coding downstream 169005 6046988 ~ 6051076 (-)
XLOC_026044 mcoln1b coding downstream 184315 5991765 ~ 6035766 (-)
XLOC_026050 NA coding upstream 8952 6237098 ~ 6240065 (-)
XLOC_026051 BX004785.2 coding upstream 50606 6278752 ~ 6281503 (-)
XLOC_026052 NA coding upstream 80547 6308693 ~ 6376938 (-)
XLOC_026053 jpt1b coding upstream 152014 6380160 ~ 6417328 (-)
XLOC_026054 sumo2b coding upstream 195128 6423274 ~ 6441619 (-)
XLOC_026041 CABZ01064408.1 non-coding downstream 470054 5744408 ~ 5750027 (-)
XLOC_026040 CABZ01064405.1 non-coding downstream 494463 5718913 ~ 5725618 (-)
XLOC_026056 NA non-coding upstream 297552 6525698 ~ 6529154 (-)
XLOC_026058 FP016106.1 non-coding upstream 328814 6556960 ~ 6597195 (-)
XLOC_026064 NA non-coding upstream 822373 7050519 ~ 7077819 (-)

Expression


Co-expression Network