G677297


Basic Information

Item Value
gene id G677297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15347278 ~ 15347509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU771512
GTCATAAAGGGCACATGTTCAGTTTGATAAAGAACACGTTTCCCCATCTCAaggggttaaataaaaatattactagagcaagtgcctattaagtgccaaatcaAGTAACAGGGTTAAATCCCCTTGTGATGGggatggaagcttgttgtgtgggGCAGGGAGGGgtaattgaatgcaagcttcaacCCAAAAAAAGAAAccctaaaacatttctagcctgtctatctatggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU771512 True 232 lncRNA 0.41 1 15347278 15347509

Neighbor

gene id symbol gene type direction distance location
nkx2.1b nkx2.1b coding upstream 70347 15274628 ~ 15276931 (+)
LOC110529464 LOC106571299 coding upstream 86947 15258311 ~ 15260331 (+)
LOC110529462 LOC106571241 coding upstream 209093 15135212 ~ 15138185 (+)
LOC110529460 NA coding upstream 223228 15119099 ~ 15124050 (+)
LOC110529458 LOC106571242 coding upstream 242170 15039114 ~ 15105108 (+)
crnkl1 LOC106571265 coding downstream 129445 15476954 ~ 15483621 (+)
LOC110529475 LOC106571272 coding downstream 507113 15854622 ~ 15888522 (+)
LOC110529476 LOC106571274 coding downstream 545067 15892576 ~ 16023051 (+)
trnaa-ugc-22 NA coding downstream 616060 15963569 ~ 15963643 (+)
LOC110529479 nt5e coding downstream 888258 16235767 ~ 16246138 (+)
G677288 LOC100194703 non-coding upstream 13111 15333945 ~ 15334167 (+)
G677286 NA non-coding upstream 14568 15332473 ~ 15332710 (+)
G677281 NA non-coding upstream 17653 15329387 ~ 15329625 (+)
G677280 NA non-coding upstream 18453 15328585 ~ 15328825 (+)
G677279 NA non-coding upstream 19234 15327665 ~ 15328044 (+)
G677483 NA non-coding downstream 147720 15495229 ~ 15495469 (+)
G677485 NA non-coding downstream 152473 15499982 ~ 15500208 (+)
G677488 NA non-coding downstream 156090 15503599 ~ 15584266 (+)
G677539 NA non-coding downstream 240846 15588355 ~ 15588848 (+)
G677648 NA non-coding downstream 282089 15629598 ~ 15684714 (+)
G676919 NA other upstream 240135 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 588354 14749575 ~ 14758924 (+)
G676226 NA other upstream 984307 14360577 ~ 14362971 (+)
G675705 NA other upstream 1490996 13855660 ~ 13856282 (+)
G678417 LOC106571283 other downstream 1037293 16384802 ~ 16385945 (+)
LOC110529493 LOC106571284 other downstream 1039941 16387411 ~ 16390869 (+)
LOC110529505 LOC106571335 other downstream 1545650 16893102 ~ 16921697 (+)
G681909 NA other downstream 3816427 19163936 ~ 19165640 (+)
G682611 NA other downstream 4381324 19728833 ~ 19729671 (+)

Expression


Co-expression Network