G677539


Basic Information

Item Value
gene id G677539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 15588355 ~ 15588848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU771766
GAGGGATATGTGATTCATATGACTACTGACTGATTATAGCATCTGTTACGCTTCAGTTAACATGGTGTGTGATAGCAGGGTGTGTGATAACAGCGTGTGTGATAGCAGGGTGTGTGATAACAGGGTGTGTGATAACAGGGTCTGTGATAACAGGGTGTGTTGATAACAGGGTGTGTGATAATAGGGTGTGTGATAACAGGGTGTTTGATAGCAGGGTGTGTGATAACAGGGCGTGTGATAACAGGGTCTGTGATAACAGGGTGTGTGATAACAGGGTGTGTTGATAACAGGGTGTGTGATAACAGGGTCTGTGATAACAGGGTGTGTTGATAACAGGGTGTGTGATAACAGGGTGTGTGATACAGGGTGTGTTGATAACAGGGTGTGTTGATAACAGGATGTGATAACAGGGTGTGTGATAACAGGGTGTGTGATAACAGGATGTGTGA

Function

NR:

description
PREDICTED: repetitive proline-rich cell wall protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU771766 True 449 lncRNA 0.45 2 15588355 15588848

Neighbor

gene id symbol gene type direction distance location
crnkl1 LOC106571265 coding upstream 104734 15476954 ~ 15483621 (+)
nkx2.1b nkx2.1b coding upstream 311424 15274628 ~ 15276931 (+)
LOC110529464 LOC106571299 coding upstream 328024 15258311 ~ 15260331 (+)
LOC110529462 LOC106571241 coding upstream 450170 15135212 ~ 15138185 (+)
LOC110529460 NA coding upstream 464305 15119099 ~ 15124050 (+)
LOC110529475 LOC106571272 coding downstream 265774 15854622 ~ 15888522 (+)
LOC110529476 LOC106571274 coding downstream 303728 15892576 ~ 16023051 (+)
trnaa-ugc-22 NA coding downstream 374721 15963569 ~ 15963643 (+)
LOC110529479 nt5e coding downstream 646919 16235767 ~ 16246138 (+)
bub1 LOC100306849 coding downstream 704473 16293321 ~ 16301586 (+)
G677488 NA non-coding upstream 4089 15503599 ~ 15584266 (+)
G677485 NA non-coding upstream 88147 15499982 ~ 15500208 (+)
G677483 NA non-coding upstream 92886 15495229 ~ 15495469 (+)
G677297 NA non-coding upstream 240846 15347278 ~ 15347509 (+)
G677288 LOC100194703 non-coding upstream 254188 15333945 ~ 15334167 (+)
G677648 NA non-coding downstream 40750 15629598 ~ 15684714 (+)
G678305 NA non-coding downstream 565702 16154550 ~ 16154784 (+)
G678309 NA non-coding downstream 567456 16156304 ~ 16156673 (+)
G678332 NA non-coding downstream 576350 16165198 ~ 16165428 (+)
G678333 NA non-coding downstream 577058 16165906 ~ 16166126 (+)
G676919 NA other upstream 481212 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 829431 14749575 ~ 14758924 (+)
G676226 NA other upstream 1225384 14360577 ~ 14362971 (+)
G675705 NA other upstream 1732073 13855660 ~ 13856282 (+)
G678417 LOC106571283 other downstream 795954 16384802 ~ 16385945 (+)
LOC110529493 LOC106571284 other downstream 798602 16387411 ~ 16390869 (+)
LOC110529505 LOC106571335 other downstream 1304311 16893102 ~ 16921697 (+)
G681909 NA other downstream 3575088 19163936 ~ 19165640 (+)
G682611 NA other downstream 4139985 19728833 ~ 19729671 (+)

Expression


Co-expression Network