G678309


Basic Information

Item Value
gene id G678309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16156304 ~ 16156673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU772638
gttggaggatgcgttgtatggttgacaggcttacagcattgatgttgttaaatatggtgtcattattcaagatatgctctcttatctctcgaatcctaattgcattgttggccaaaaccatatttataattgcagtctcttgtacatctgtaaacaagtgtCCTcatcctccatgatgtctttgcctttccactctgtacagaattcaaacacagtatgtgttcagcataggtaaacaatgtacaaaaaaaggtagtacagcatgataaccaacctcattcattcaatgcagtgcagtaaatggatggcttagagttacaaatgtttatgcaatactatgcagtcatacgtattttacagtacattactg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606817

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU772638 True 370 lncRNA 0.37 1 16156304 16156673

Neighbor

gene id symbol gene type direction distance location
LOC110529476 LOC106571274 coding upstream 133253 15892576 ~ 16023051 (+)
trnaa-ugc-22 NA coding upstream 192661 15963569 ~ 15963643 (+)
LOC110529475 LOC106571272 coding upstream 267782 15854622 ~ 15888522 (+)
crnkl1 LOC106571265 coding upstream 672683 15476954 ~ 15483621 (+)
nkx2.1b nkx2.1b coding upstream 879373 15274628 ~ 15276931 (+)
LOC110529479 nt5e coding downstream 79094 16235767 ~ 16246138 (+)
bub1 LOC100306849 coding downstream 136648 16293321 ~ 16301586 (+)
LOC110529488 htr1e coding downstream 198707 16355380 ~ 16356858 (+)
znf292b LOC106571280 coding downstream 200705 16357378 ~ 16383176 (+)
LOC110529493 LOC106571284 coding downstream 230738 16387411 ~ 16390869 (+)
G678305 NA non-coding upstream 1520 16154550 ~ 16154784 (+)
G677648 NA non-coding upstream 471590 15629598 ~ 15684714 (+)
G677539 NA non-coding upstream 567456 15588355 ~ 15588848 (+)
G677488 NA non-coding upstream 572038 15503599 ~ 15584266 (+)
G677485 NA non-coding upstream 656096 15499982 ~ 15500208 (+)
G678332 NA non-coding downstream 8525 16165198 ~ 16165428 (+)
G678333 NA non-coding downstream 9233 16165906 ~ 16166126 (+)
G678326 NA non-coding downstream 64679 16221352 ~ 16280431 (+)
LOC118965606 NA non-coding downstream 272066 16428557 ~ 16432253 (+)
G678449 NA non-coding downstream 275657 16432330 ~ 16432671 (+)
LOC110529464 LOC106571299 other upstream 896314 15258311 ~ 15260331 (+)
G676919 NA other upstream 1049161 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 1397380 14749575 ~ 14758924 (+)
G676226 NA other upstream 1793333 14360577 ~ 14362971 (+)
G675705 NA other upstream 2300022 13855660 ~ 13856282 (+)
G678417 LOC106571283 other downstream 228129 16384802 ~ 16385945 (+)
LOC110529505 LOC106571335 other downstream 736486 16893102 ~ 16921697 (+)
G681909 NA other downstream 3007263 19163936 ~ 19165640 (+)
G682611 NA other downstream 3572160 19728833 ~ 19729671 (+)

Expression


Co-expression Network