G678962


Basic Information

Item Value
gene id G678962
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16248881 ~ 16255432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU773366
aaactccccagaccttaatcccccAAAAATttaaaagtggtgcgtgcatatgtattcacccctttgccatgaagcccctaaataagatctggtgcaaccaagtccacctgtgtgcaatttaagtgtcacatgatctgtcacatgatctcagtatacatacatctgttctgaaagtccccagagtctacaacaccactaagaaagaggcaccaccaagcaagcagcactataacgaccaaggagctctccaaacaggtcagggacaaagttgtggagtacagataagggttgggttataaaaaaatatcagaaacgttGAACATTCCACGGAGcacaattaaatccattataaaaaaatggaaagaatatggcaccacaacaaaccttccaagagagggccgcccaccaaaactcacagaccaggcaaggagggcatcaATCAGAGAGTcagcaaagagaccaaagataaccctgacggagctacaaagctccacagcggagattggtgAATTTGTTGGAGTATAGGACcgctttaagccgtacactccacagagctgggctttacggaagagtggccagaaaaagccattgcttaaagaaataaattggtgttcgccaaaggcatgtgggagactccccaaacattgaagaaggtactctgatcagatgagactaaaatataggtttttggccatcaaggaaaacgctatgtctggtgcaaacccaacacctctcatcacccgagaacaccatccctacagtgaagtatggtggtggcaacatcatgctgtggggatgtttttcattggcaggaactgggaaactggtcagaattgaaggaatgatggatggtgcaaatacagggaaattcttgagggaaacctgtttcagtctgccagagatttgagactgggacggaggttcacttGGGACggaagacaatgaccctaagcatactgccaaagtaacactcgagtggtttaaggggaaacatttaaatgtcttggaatggcctagtcaaagcccagaccttaatccaattgagaatctgaagtatgacttaaagattgacttgaaggagctggagcttgaagaatgggcaaaaatcccagtggcttgatgttccaagcttatagagacataccccaagagacttgcagctgtaattgctgcataaggtggctctacaaagtattgactttgggggggggtgaAAAGTTATGCaggctcaagttttcagttttttgtcttatttcttgtttgtttcacaaaaaatattttgcatcttcaaagtggtag

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU773366 True 1299 lncRNA 0.44 2 16248881 16255432

Neighbor

gene id symbol gene type direction distance location
LOC110529477 LOC106571275 coding downstream 108428 16136898 ~ 16140453 (-)
LOC110529191 LOC106571273 coding downstream 189619 16021030 ~ 16059262 (-)
LOC110529474 LOC106571271 coding downstream 405268 15813750 ~ 15843613 (-)
LOC110529472 LOC106571270 coding downstream 447203 15797446 ~ 15801678 (-)
LOC110529470 LOC106571269 coding downstream 464304 15682572 ~ 15784577 (-)
LOC110529480 LOC106571276 coding upstream 15972 16271404 ~ 16281281 (-)
LOC110529483 NA coding upstream 29124 16284556 ~ 16293266 (-)
LOC118965666 NA coding upstream 30150 16285582 ~ 16285653 (-)
LOC118965667 NA coding upstream 30397 16285829 ~ 16285900 (-)
LOC118965675 NA coding upstream 30645 16286077 ~ 16286148 (-)
G678317 NA non-coding downstream 88372 16160207 ~ 16160509 (-)
G678315 NA non-coding downstream 90480 16158170 ~ 16158401 (-)
G678313 NA non-coding downstream 91049 16157607 ~ 16157832 (-)
G678307 NA non-coding downstream 93978 16154476 ~ 16154903 (-)
G678300 NA non-coding downstream 98263 16150407 ~ 16150618 (-)
G679003 NA non-coding upstream 28280 16283712 ~ 16283918 (-)
G678959 NA non-coding upstream 30377 16285809 ~ 16288529 (-)
G679008 LOC100306849 non-coding upstream 42958 16298390 ~ 16299479 (-)
G679027 NA non-coding upstream 127442 16382874 ~ 16383170 (-)
G676635 LOC106571254 other downstream 1732353 14508329 ~ 14516528 (-)
G676178 NA other downstream 1960536 14287849 ~ 14288345 (-)
G676077 NA other downstream 2041256 14206987 ~ 14207625 (-)
G675834 LOC106571238 other downstream 2262773 13983626 ~ 13986108 (-)
G675415 NA other downstream 2762744 13485679 ~ 13486137 (-)
G679087 NA other upstream 177189 16432621 ~ 16433014 (-)
G679210 LOC106571290 other upstream 369658 16625090 ~ 16630259 (-)
G679471 NA other upstream 858111 17113543 ~ 17114528 (-)
G681659 NA other upstream 2535798 18791230 ~ 18792137 (-)
G684844 NA other upstream 5223334 21478766 ~ 21479203 (-)

Expression


Co-expression Network