XLOC_026053 (jpt1b)


Basic Information

Item Value
gene id XLOC_026053
gene name jpt1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6380160 ~ 6417328 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050946
GGGCTTCGTGGGCTGGTCTAAAAGGGCCGCTCCGCTGCGCTCGGATTTCAGCTGGTCCGGGCGGAGTCCATGCGGGATAAAGGACTTACACCAATTCAGTCCAGCCGAAGGGTTTCTAACGCGCTTTAGCGAGCAACACCACCCGCTCAACATGACCACGACGACCACTTTCCAAGGCATGGAGCCAGGTGCCAAAAACAGCTCGAGGGTGTTGCGTCCTCCTGGCGGAGCCTCCAACATCTCCTTCGGCACAGAGGAAGAGAAGCCAGTGCGCAAGAACAAGATGGCCTCCAGTATTTTTGCTGAACCCGACGACCCTCACGCCCACCGGAGGAACAACCCGCCAgGTGGAGAAGCGTCTGGAGTGTTGTGCGGTGAACCTTCAGCTCCTCTGAGACGATGTCAGCCTGCTATAGTGTATGATGAAGGTGCAGGAGAGCCACAGCCCAACCATGAGgATCATCATGAATATGAGCAAGAGAACCACGagGAGTGTGTGGAGCAGAAAGAGGACTCCTCCTCGGCCTCCGCTCAGCCGTCTGCTGGAAACGCGTCCGGCCGCAGGAATCCTCCAGGAGGAAAATCCAGCCTGATCCTGGGCTGAAGAAGCCTTCACTGAACTATCTCTGCTCTTTCTGTCCCTTTCCTCCTCTTTTTTTAACGGATCTGCCCTTTCCTTCACTCTTCTCGTGAGCCATGGGAATTTTTTGTCCTCCACCGTCTTTTCATTTttctattgcaaaaaaaaaacaagaagaagaagaaaaaacgaAAGAAGAAAAAGCAGAGCGACGCGATCGTTGACAGAAGCACTTTATGTAAGAGGTCCGTTTCAGCCGCTCCTGCAGGAATAATGGCATGAGAGATTCAGATCGACCgcgaaaaaacaaacacacaaaagaaaagaGAAGAATTGTTGCGCAAAATTTCTAAGTACAAATAAAGATTGATATGAA
>TCONS_00050947
CAGCTGGTCCGGGCGGAGTCCATGCGGGATAAAGGACTTACACCAATTCAGTCCAGCCGAAGGGTTTCTAACGCGCTTTAGCGAGCAACACCACCCGCTCAACATGACCACGACGACCACTTTCCAAGGCATGGAGCCAGGTGCCAAAAACAGCTCGAGGGTGTTGCGTCCTCCTGGCGGAGCCTCCAACATCTCCTTCGGCACAGAGGAAGAGAAGCCAGTGCGCAAGAACAAGATGGCCTCCAGTATTTTTGCTGAACCCGACGACCCTCACGCCCACCGGAGGAACAACCCGCCAgGTGGAGAAGCGTCTGGAGTGTTGTGCGGTGAACCTTCAGCTCCTCTGAGACGATGTCAGCCTGCTATAGTGTATGATGAAGGTGCAGGAGAGCCACAGCCCAACCATGAGGTCAGTTCACCAACACACACTCCACAGCAGGACCTGATTGAAACACGCTATACCTCACTACACCACTGACTCAAAATAAGACTTTTACTTCCAATAAATGCCAATACAGACAATGCATCAATACAgacataaactatttattttatataaaaatttaaattcacaTCGTGCATAGCActgcataataatcttattttagTGTTCAGtggtttaaaatttattatttatttattattattatttttttggttacTTTGAATTAGATTTAGTTTATAATCTTGGTGTTATTCGTTGTGTAAATAATGATTTTATaattctttttgttattttggtctTTAAGCGAAGT

Function

symbol description
jpt1b Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2784 Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1).

Ensembl:

ensembl_id ENSDARG00000099312

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050946 False 956 mRNA 0.51 5 6380160 6417328
TCONS_00050947 True 755 lncRNA 0.44 3 6393774 6417280

Neighbor

gene id symbol gene type direction distance location
XLOC_026052 NA coding downstream 3222 6308693 ~ 6376938 (-)
XLOC_026051 BX004785.2 coding downstream 98657 6278752 ~ 6281503 (-)
XLOC_026050 NA coding downstream 140095 6237098 ~ 6240065 (-)
XLOC_026049 NA coding downstream 152014 6220081 ~ 6228146 (-)
XLOC_026048 NA coding downstream 168200 6203736 ~ 6211960 (-)
XLOC_026054 sumo2b coding upstream 5946 6423274 ~ 6441619 (-)
XLOC_026055 gga3b coding upstream 73192 6490520 ~ 6519760 (-)
XLOC_026056 NA coding upstream 108370 6525698 ~ 6529154 (-)
XLOC_026057 si:ch1073-209h18.1 coding upstream 136034 6553362 ~ 6555154 (-)
XLOC_026058 FP016106.1 coding upstream 139632 6556960 ~ 6597195 (-)
XLOC_026046 NA non-coding downstream 284339 6073491 ~ 6095821 (-)
XLOC_026064 NA non-coding upstream 633191 7050519 ~ 7077819 (-)
XLOC_026065 NA non-coding upstream 666179 7083507 ~ 7121370 (-)
XLOC_026077 NA non-coding upstream 927782 7345110 ~ 7346494 (-)

Expression


Co-expression Network