G678417 (LOC106571283)


Basic Information

Item Value
gene id G678417
gene name LOC106571283
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16384802 ~ 16385945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU772775
TGAATTCTGATCGCAATAAATTATTAGGTAATTTAATGCAATTTAAGAGGGAAAGGGTTGGTTTCCCTTTGTTGCTGGATCTTGTGAGCCCATTGTATATTTGTTAGGTGTGGGATGAAGGGTTGAGGAACTGTTGCTGATTGGGACAGTGTGATTACAATGCCAGTGAGCTCTCTCTTCAATGGGGATATACCGCTTGCTAAAACACTTCCAGCACTGTTTAGATAGGATGTATACCATCTCCGAGACATTCAGTGCAATACACAATATGGACGTACAGCCCATGATGTAGAGGAAGACCATCTTCTCAGTGGCTTTGGAGATGTAGCAGTCTACGGTGTTAGGGCAAGGGTCCAGGCTGCAGCGAAGCAGTCTGGGAACGTCAAAGCCACTGTAGAGGAAGTAGAAGGCCAGGAGGGAGCCTACCTCGAAGGTAGTCTTGAAGACGAGGCTGAGGATATAGGTGCAGAGCAGACCTCCGTCAATCCTACCTTTGTCCTCATACAGCTTCTTGCCATGCCTGCTCTCCCTGTTCTCACGGTAGGCCACGTGTAGAGCCACCAACAGGGATGGAGTGGACACCATGATGAGCTGGAGGGCCCACAGGCGGATCTGGGAGATGGGGAAGAAATGGTCGAAGCACACGTTCTCACAGCCAGGCTGCTGGGTGTTGCAGACAAAGTCATTGTGCTCGTCCTTCCAGACCTGCTCAGCAGCCGCCACGTACACCAGGATGCGGAAGATGAAGACGATGGAGAGCCAGATGCGGCCGATGACTGTGGAGTACTTGTTTACCCCACTCAGGACGTTCTCCAGAAACCCCCAGTTTGACATCTCTCTGATTACATGAgcctgtggagaagggagaaacTGTAGATATGgggctctgtcccaaatggaaccaatattattccctacatagtgcactacttttgaccagactgTTCAAAAGAAATGCACTATgttgtagagaatagggtgccatttgtgacacaagGACACAACCCTGTAGATACAAGGCCAATACTAAATTCTGCCTGTTATGATGAAGAGGGCATCATCTGACAATATAAATATATTCCAATCATACATTGCCCTTAGGAGGCTACATTTCTATATTCACCATTCTCTCCACTATAAATAG

Function

NR:

description
gap junction beta-7 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU772775 True 1144 TUCP 0.48 1 16384802 16385945

Neighbor

gene id symbol gene type direction distance location
znf292b LOC106571280 coding upstream 1626 16357378 ~ 16383176 (+)
LOC110529488 htr1e coding upstream 27944 16355380 ~ 16356858 (+)
bub1 LOC100306849 coding upstream 83216 16293321 ~ 16301586 (+)
LOC110529479 nt5e coding upstream 138664 16235767 ~ 16246138 (+)
LOC110529476 LOC106571274 coding upstream 361751 15892576 ~ 16023051 (+)
LOC110529493 LOC106571284 coding downstream 1466 16387411 ~ 16390869 (+)
LOC110529491 LOC106571281 coding downstream 5286 16391231 ~ 16406097 (+)
cfap206 cfap206 coding downstream 20290 16406235 ~ 16411381 (+)
LOC110529494 slc35a1 coding downstream 27830 16413775 ~ 16423971 (+)
LOC118965606 NA coding downstream 42612 16428557 ~ 16432253 (+)
G678326 NA non-coding upstream 104371 16221352 ~ 16280431 (+)
G678333 NA non-coding upstream 218676 16165906 ~ 16166126 (+)
G678332 NA non-coding upstream 219374 16165198 ~ 16165428 (+)
G678309 NA non-coding upstream 228129 16156304 ~ 16156673 (+)
G678305 NA non-coding upstream 230018 16154550 ~ 16154784 (+)
G678449 NA non-coding downstream 46385 16432330 ~ 16432671 (+)
G678451 NA non-coding downstream 48564 16434509 ~ 16434734 (+)
G678453 NA non-coding downstream 51014 16436959 ~ 16437366 (+)
G678455 NA non-coding downstream 52126 16438071 ~ 16438380 (+)
LOC110529464 LOC106571299 other upstream 1124812 15258311 ~ 15260331 (+)
G676919 NA other upstream 1277659 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 1625878 14749575 ~ 14758924 (+)
G676226 NA other upstream 2021831 14360577 ~ 14362971 (+)
G675705 NA other upstream 2528520 13855660 ~ 13856282 (+)
LOC110529505 LOC106571335 other downstream 507214 16893102 ~ 16921697 (+)
G681909 NA other downstream 2777991 19163936 ~ 19165640 (+)
G682611 NA other downstream 3342888 19728833 ~ 19729671 (+)
G683669 NA other downstream 4176930 20562875 ~ 20563434 (+)

Expression


Co-expression Network