XLOC_026054 (sumo2b)


Basic Information

Item Value
gene id XLOC_026054
gene name sumo2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 6423274 ~ 6441619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050948
CTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGTGTAAAGACAGAAAACAACGACCACATCAACCTGAAGGTGGCGGGTCAGGACGGCTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCGCTCAGCAAACTCATGAAGGCCTACTGCGAGAGACAGGGACTGACAATGAGGCAAATTCGATTCCGGTTTGACGGACAGCCTATTAACGAGACAGACACGCCCGCACAGTTGGAGATGGAGGATGAAGACACAATTGACGTTTTCCAGCAGCAGACAGGAGGACACCGAATCTGAATAACTCTCCAccgacatctctctctctctctctgctcatCTGTACCTGCTGTTGTATAGTGTTTTCACCATTTCATGTTCACCATGTTCCTCTTTGGTTTTGTACATAAAGGGTTCCTGCTCCAGGACTATCACAGCCAGATCATGTGAGAAAGCCAGccgtgtgtgtttttgagttcaGGGTTTGTTCTGCTTCAGatacgagcacacacacacacacacacacacacacacacacacacacacacacacacactggccttttttttttttgccaagttGAAATTGTggataaataaatgcatagatGCTCTGCTCTGTTACTTCTCAAGCAGACACAAAAGCTGCGGGTTTCCATTCAGActaattggttttatttttgttttaccgtAGTGGTCATGTATAGTGAGGCACTTGTGTTCAACATGTTTCTACTCCAGTGGTTAATCGAGGGAATTCATGTTTCAGACAAGTCCCAGCCATCCGTCTGTATTGTCCAATAATctcttgttaaaataaaatattctcttTTTATCAAA
>TCONS_00050949
CTTTGTGTGGCGGCGTAGAGAAGCGCAAATACAATAACCATGGCCGACGAGAAACCCAAGGAGGGTGTAAAGACAGAAAACAACGACCACATCAACCTGAAGGTGGCGGGTCAGGACGGCTCGGTGGTCCAGTTTAAAATCAAGAGACACACACCGCTCAGCAAACTCATGAAGGCCTACTGCGAGAGACAGGGACTGACAATGAGGCAAATTCGATTCCGGTTTGACGGACAGCCTATTAACGAGACAGACACGCCCGCACAGTTGGAGATGGAGGATGAAGACACAATTGACGTTTTCCAGCAGCAGACAGGAGGACACCGAATCTGAATAACTCTCCAccgacatctctctctctctctctgctcatCTGTACCTGCTGTTGTATAGTGTTTTCACCATTTCATGTTCACCATGTTCCTCTTTGGTTTTGTACATAAAGGGTTCCTGCTCCAGGACTATCACAGCCAGATCATGTGAGAAAGCCAGccgtgtgtgtttttgagttcaGGGTTTGTTCTGCTTCAGacacacacacacacacacacacacactggccttttttttttttgccaagttGAAATTGTggataaataaatgcatagatGCTCTGCTCTGTTACTTCTCAAGCAGACACAAAAGCTGCGGGTTTCCATTCAGActaattggttttatttttgttttaccgtAGTGGTCATGTATAGTGAGGCACTTGTGTTCAACATGTTTCTACTCCAGTGGTTAATCGAGGGAATTCATGTTTCAGACAAGTCCCAGCCATCCGTCTGTATTGTCCAATAATctcttgttaaaataaaatattctcttTTTATC

Function

symbol description
sumo2b Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO2 (small ubiquitin like modifier 2).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0016925 protein sumoylation biological_process
GO:0005634 nucleus cellular_component
GO:0044389 ubiquitin-like protein ligase binding molecular_function
GO:0031386 protein tag molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-7 Predicted to enable protein tag and ubiquitin-like protein ligase binding activity. Acts upstream of or within chordate embryonic development and definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; cranial neural crest cell; digestive system; eye; and pectoral fin bud. Orthologous to human SUMO2 (small ubiquitin like modifier 2).

Ensembl:

ensembl_id ENSDARG00000102741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050948 False 869 mRNA 0.45 4 6423274 6441619
TCONS_00050949 True 834 mRNA 0.45 5 6423277 6441619

Neighbor

gene id symbol gene type direction distance location
XLOC_026053 jpt1b coding downstream 5946 6380160 ~ 6417328 (-)
XLOC_026052 NA coding downstream 46336 6308693 ~ 6376938 (-)
XLOC_026051 BX004785.2 coding downstream 141771 6278752 ~ 6281503 (-)
XLOC_026050 NA coding downstream 183209 6237098 ~ 6240065 (-)
XLOC_026049 NA coding downstream 195128 6220081 ~ 6228146 (-)
XLOC_026055 gga3b coding upstream 48901 6490520 ~ 6519760 (-)
XLOC_026056 NA coding upstream 84079 6525698 ~ 6529154 (-)
XLOC_026057 si:ch1073-209h18.1 coding upstream 111743 6553362 ~ 6555154 (-)
XLOC_026058 FP016106.1 coding upstream 115341 6556960 ~ 6597195 (-)
XLOC_026059 si:ch73-59f11.3 coding upstream 158675 6600294 ~ 6608342 (-)
XLOC_026048 NA non-coding downstream 211314 6203736 ~ 6211960 (-)
XLOC_026046 NA non-coding downstream 327453 6073491 ~ 6095821 (-)
XLOC_026064 NA non-coding upstream 608900 7050519 ~ 7077819 (-)
XLOC_026065 NA non-coding upstream 641888 7083507 ~ 7121370 (-)
XLOC_026077 NA non-coding upstream 903491 7345110 ~ 7346494 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G232944 NA non-coding CI01000054 null 7178248 ~ 7178633 (+)
grasscarp (Ctenopharyngodon idella) G397728 NA non-coding CI01000240 null 73838 ~ 82100 (-)