G678618 (LOC106571292)


Basic Information

Item Value
gene id G678618
gene name LOC106571292
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16685786 ~ 16687513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU772998
AAAATCTGCTCCAAAAAGGATACATTCTTAATATTTGATGCAACAATAATCAGCCGTAGTTGTGCAGCTTGTGGACAAGCATCTGCATGAGGTGGTTTGCATTGGTTAAGCATTTGTCCAACATGCTGACATATCTACAGCGGCAATATGGATGCAAGAGCTTCGTGCGTTCTGATGAGTGACATCACAGCCTAGTAAATCCAGCTCATGCTTGTGGCTACCTACttactacatacagtaccatGTTTACTAATATATTGGTTGGCTAGAATACTGTCTAGAAAACTTGCACAAAGCGATATGTAGTCACTCGTAATCCAAACAGtcaatcaaacaaacaaacagaaaaaatATAGCTGTGGCGTGGAACCACAGCCATAAAAAAGAAACAGTTCACTTAAGGCTGTTCAAGTTCATTACATCACTGATAATGCTTCATAATAGTTCACATAAGCATTCATAAATGGTATCCATCCTCACTGAATTTCTGTGACCACTGACCTCATAAGAAATTCGGGAACTGCAGCCACTCTGAAAAATCTATCCAGTCTCATTGTCTTTAACATCTTAAGGTATAATGGAATATGATTCTATCAGTGCACTATAAAGTAATTATGTAAGTAAAGTGAAAGGCCaaaaatgaatgaataaataaataggtTAATAATGAATAAACaatgaaataaacaatgaaataCTGTATCTATGTGAATCTTTTTCATGATAATTCCATCTTGTATTATGTCGGTTTACATTTTTGTGTGGTTTTCTCAATCATTATCAACTGTTAAAAATAATAACACTTGGTGCATTCCTAGAAGACAAGTCTGTGGCTGTGTTTCAATGTGCTCATTAGCAATTGGTGCTTGCACTCACTCTGATCTGTCAAATAAACGTGGTTTAGAGGTCAAACCCTCGCATTATAGAGCAAGCTTTCTGTTTTCTGGTTAAAGAGGCAAGCTTGGGCAACACTTAGTCCATTCCAGATGTACATATACTGTCAGTATTACAGATATTGTTTCCCTGCTTTGACAGTACCATGAAGATAAAACAGCATTGATTCCAGAGATCAAATTCCATCGTAGTTTGTTGCTTGGACCTGCATGGTTGTGtaaatagtttatatagagaaagTAGGAAAGCTGTACAGTTGAGTCAAGTAGTAAGATGGTTGTAGCTAATGGTGTGAGGATAGTATGGTGTTATCCATCCAGAGATCTGGGAAATCCTTTGTGAGATCTGCCGTTATGCACCCAGGTGTTAAGATATGGAGGTCATTACCACTTTGAGTCATTATCAGAGTCCAATAGCTGTCCTGTTTTATCTGGTACAGTAAACACCAGTAGATTGTCTCTCTGCTGACTGTACCAGGAACATCTGGGAGAGCCTCAGCAGTATGCAGACCAGTATATGAGGTTAAAGATAATGTAGGATCCTGGAAAGATCATGCGGGAGTAGGTGTCTATGGCGTGGGTGTTCTGCATGAGGCTGAAGCTGCGGAAGCGCGCTTTCTTCTTGGTTCCCGTGGACTCATTGTCCAGGGATAGGTGCACCACCATGTGCTCTTGCTTCTCTGGGGTGTCCTCGGGAGCGTCAGCCCTGGTGTATCCGGCCAGGCTGTTGGTGTCGGCCTCGCTGTAGGTCCCGTCGCCATCCACCATCACGGTCCCAGTGTGGGACATGCCACAGGTGCAGGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU772998 True 1697 lncRNA 0.41 2 16685786 16687513

Neighbor

gene id symbol gene type direction distance location
LOC110529497 LOC106571290 coding upstream 55518 16624843 ~ 16630268 (+)
LOC118965606 NA coding upstream 253533 16428557 ~ 16432253 (+)
LOC110529494 slc35a1 coding upstream 261815 16413775 ~ 16423971 (+)
cfap206 cfap206 coding upstream 274405 16406235 ~ 16411381 (+)
LOC110529491 LOC106571281 coding upstream 279689 16391231 ~ 16406097 (+)
LOC110529502 LOC106571295 coding downstream 106205 16793718 ~ 16826016 (+)
LOC110529505 LOC106571335 coding downstream 205589 16893102 ~ 16921697 (+)
LOC110529507 LOC106571333 coding downstream 234263 16921776 ~ 16925688 (+)
LOC110529193 NA coding downstream 992692 17680205 ~ 17681988 (+)
LOC110529511 LOC106571328 coding downstream 994551 17682064 ~ 17701475 (+)
G678472 NA non-coding upstream 218276 16467196 ~ 16467510 (+)
G678469 NA non-coding upstream 220936 16464568 ~ 16464850 (+)
G678466 NA non-coding upstream 225284 16460254 ~ 16460502 (+)
G678464 NA non-coding upstream 227002 16458504 ~ 16458784 (+)
G678442 NA non-coding upstream 227718 16455421 ~ 16458068 (+)
G678746 NA non-coding downstream 213790 16901303 ~ 16901967 (+)
G678833 NA non-coding downstream 303593 16991106 ~ 16991589 (+)
G678915 NA non-coding downstream 418636 17106149 ~ 17106450 (+)
G678918 NA non-coding downstream 424815 17112328 ~ 17112646 (+)
G679497 NA non-coding downstream 513712 17201225 ~ 17251687 (+)
LOC110529493 LOC106571284 other upstream 297450 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 299841 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 1425796 15258311 ~ 15260331 (+)
G676919 NA other upstream 1578643 15105603 ~ 15107143 (+)
LOC110529454 LOC106571249 other upstream 1926862 14749575 ~ 14758924 (+)
G681909 NA other downstream 2476423 19163936 ~ 19165640 (+)
G682611 NA other downstream 3041320 19728833 ~ 19729671 (+)
G683669 NA other downstream 3875362 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 3939437 20626950 ~ 20632899 (+)

Expression


Co-expression Network