G679332


Basic Information

Item Value
gene id G679332
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 16818931 ~ 16821129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU773784
ctgagaaaaaatccaaccaggaagttggaaatctgaggtttgtagtttttcaactcagcccccattgaagatacagggtgatattagttatgtttcacttcccaaggcttccactagatgtcaaaatctgttttgaggattctactctaaaggaggggctcatgagggctctttgagtgagtggtctggcagcgcgctcacgtgaaaggtagctactttccacttcatttgtacagacaaaggaattgtccggttgtaACATTAaggaagttttatgttaaaaatatcctaaagatttattccatacttagtttggcatgtttctacgggctgtaacagaactttttgaacttttcgtccgacgttcttcgcgacctgaacgcgcttttggatttgtttaccaaacgccatAACAAAAGAAtatatttggacataactgatggacattatcgaacaaatcaaacattcatggtggaactgggattcctgggagtgcattctgatgaagatcatcaaaggtaagtgaatatttaaatcaatgtttattattagtatttctgtaaattgatgcacaatcaccgcatgttttagaacatataaatatgaactttatcaaacaaaacatacatgtattgtgtaacatgaagtcctatgagtatcatctgatgaagatcatcaaaggttagtgattaatttatctcaatttctgctttttgtgactcctctctttggctggaaaaatggctgtgtttttctgtggcttggtggtgtaAATACTTTATGAAATCAGAcactggctggattaacgagaatttgatctttaaaatggtgtaaaatacttgtatgcttaattatgagatttttgttgttttgaatttggcgccctgcactttcactggctgttgcgggGGGGTTCcgccagtcctagacaggttaaccaggtaggccagttgagaacaaattctcattcacaactgcgacctggtcaagataaagcaacaaaaacagcaacacagttacacataaacaaacgtacagtcaatagcacaatagaaaaagctatgtacattgtgtgcaaatgtagaagagtggtgaggtaggcaataaataggccattaacactggagtgatagatgtgcagatgatgatgtgcaagtagggtgcaaaagagcaagagggtaagtaataatatggttGGCTGTGTtcaggtacagtgattggtaagctgctctgacagctgatgcttaaagttagagagggagatataaaactccagcttcagtgatttttacaattcgttccagtcattggcagcagagaactggaaggaaaggcggccaaaggaagtgttggctttggggatgaccagtgaaatatacctgctggagcgcgtgctacgggtgggtgttgctatggtgaccagtgagctgagataaggcggggctttacctagcaaagacttatagatgacctggagccagtgggtttggcgatgaatatgtagtgtgggccagccaacaagagcatacaggtcgcagtggtggttattatatggggctttggtgacaaaacagatggcacagttttctgagtagagtgttgggggctattttgtaaattacatcgccgaggtcaaggatcggtaggatagtcagttttacgactATCCTAGCTAATTACAATGGATCAAATTCAAATGATGTCACGGCTTCCGCCGAAGttagtccctctccttgttcgggcggcattcgaAGTCACCgactttctagccatcgctgatcctcttttcattttcctttggttttgtcttgtcttgtatcacacctggttccaatgccatcaattacatgttgtgtatttaaccctctgttccccctcatgtccttgttggTGATTGTTTGTTAGTAAGCAATGTGCAAGATatgttctggtgtgcgacgggttttgtacttGTACCCACTCACAGCACTTGTACCCACttatattattttgtatattttggtttccGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU773784 True 2009 lncRNA 0.41 2 16818931 16821129

Neighbor

gene id symbol gene type direction distance location
LOC110529501 LOC106571293 coding downstream 60814 16721162 ~ 16758117 (-)
LOC110529499 LOC106571292 coding downstream 98240 16685761 ~ 16720691 (-)
LOC110529498 LOC106571289 coding downstream 144787 16639846 ~ 16674144 (-)
LOC118965497 NA coding downstream 313170 16467419 ~ 16505761 (-)
LOC110529495 LOC106571286 coding downstream 373918 16439558 ~ 16445013 (-)
LOC110529503 lyrm2 coding upstream 4890 16825797 ~ 16830629 (-)
LOC110529504 mdn1 coding upstream 9622 16830751 ~ 16893020 (-)
LOC110529508 LOC106571332 coding upstream 104768 16925897 ~ 17037936 (-)
LOC110529509 LOC106571331 coding upstream 234986 17056115 ~ 17081579 (-)
LOC110529510 LOC106571329 coding upstream 601637 17422766 ~ 17498984 (-)
G679107 NA non-coding downstream 355879 16462828 ~ 16463052 (-)
G679105 NA non-coding downstream 356777 16461922 ~ 16462154 (-)
G679104 NA non-coding downstream 357066 16461484 ~ 16461865 (-)
G679102 NA non-coding downstream 360137 16458300 ~ 16458794 (-)
G679364 NA non-coding upstream 81124 16902253 ~ 16910145 (-)
G679407 NA non-coding upstream 232847 17053976 ~ 17100186 (-)
G679463 NA non-coding upstream 279302 17100431 ~ 17101124 (-)
G679210 LOC106571290 other downstream 188672 16625090 ~ 16630259 (-)
G679087 NA other downstream 385917 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 2302403 14508329 ~ 14516528 (-)
G676178 NA other downstream 2530586 14287849 ~ 14288345 (-)
G676077 NA other downstream 2611306 14206987 ~ 14207625 (-)
G679471 NA other upstream 292414 17113543 ~ 17114528 (-)
G681659 NA other upstream 1970101 18791230 ~ 18792137 (-)
G684844 NA other upstream 4657637 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 5099298 21920427 ~ 21926307 (-)
G685953 NA other upstream 5337901 22159030 ~ 22161042 (-)

Expression


Co-expression Network