G679463


Basic Information

Item Value
gene id G679463
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17100431 ~ 17101124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU773936
attcagaccctttactcagtactttgttgaagcacatagGGAGTTTCctccattcttccctgcagatcctctcaagctctttcaggttggatggggagcgttgctgcacagctattatcaATTCTATCCAGAGATATTCGagcaggttcaagtccgggctctgactaggccactcaaggacattcagagacttggcccgaagccactcctgcgttgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttagccccaatctgaggtcctgagcgctctggagcaggttttcattaaggacctctctgtactttcctccgttcatctttccctcaatcttgaATCCCTCAATCTtgatctcccagtccctgctgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcaccttagggatggtgccaggtctcctccagacatgatgcttggcattcaggccaaagagttcaatcttggtttcatcagaccagagaatcttgtttctcatggtctgagagtctttaggtgccttttggcaaactctaagcgggctgttatgtgccttttactgaggagtagcttctgtctggccactctaccataaaggcctgattggtggagtgctgcaaagatggttgtccttctggaaggttctcccatctccatagagg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU773936 True 694 lncRNA 0.50 1 17100431 17101124

Neighbor

gene id symbol gene type direction distance location
LOC110529509 LOC106571331 coding downstream 18852 17056115 ~ 17081579 (-)
LOC110529508 LOC106571332 coding downstream 62495 16925897 ~ 17037936 (-)
LOC110529504 mdn1 coding downstream 207411 16830751 ~ 16893020 (-)
LOC110529503 lyrm2 coding downstream 269802 16825797 ~ 16830629 (-)
LOC110529501 LOC106571293 coding downstream 342314 16721162 ~ 16758117 (-)
LOC110529510 LOC106571329 coding upstream 321642 17422766 ~ 17498984 (-)
LOC110529512 LOC106571327 coding upstream 605485 17706609 ~ 17720195 (-)
LOC110529513 LOC106571326 coding upstream 619843 17720967 ~ 17723873 (-)
LOC110529514 LOC106571323 coding upstream 627166 17728290 ~ 17756041 (-)
LOC110529517 nt5d1 coding upstream 655129 17756253 ~ 17835551 (-)
G679407 NA non-coding downstream 245 17053976 ~ 17100186 (-)
G679364 NA non-coding downstream 190286 16902253 ~ 16910145 (-)
G679332 NA non-coding downstream 279302 16818931 ~ 16821129 (-)
G679485 NA non-coding upstream 27907 17129031 ~ 17129256 (-)
G679623 NA non-coding upstream 100130 17201254 ~ 17251247 (-)
G679642 NA non-coding upstream 121657 17222781 ~ 17227113 (-)
G679679 NA non-coding upstream 178020 17279144 ~ 17279354 (-)
G679681 NA non-coding upstream 178589 17279713 ~ 17279943 (-)
G679210 LOC106571290 other downstream 470172 16625090 ~ 16630259 (-)
G679087 NA other downstream 667417 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 2583903 14508329 ~ 14516528 (-)
G676178 NA other downstream 2812086 14287849 ~ 14288345 (-)
G676077 NA other downstream 2892806 14206987 ~ 14207625 (-)
G679471 NA other upstream 12419 17113543 ~ 17114528 (-)
G681659 NA other upstream 1690106 18791230 ~ 18792137 (-)
G684844 NA other upstream 4377642 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 4819303 21920427 ~ 21926307 (-)
G685953 NA other upstream 5057906 22159030 ~ 22161042 (-)

Expression


Co-expression Network