G680223


Basic Information

Item Value
gene id G680223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 17725231 ~ 17727416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU774726
AATTCAACTAGTGGCAACACTGTCATGGGTTGTAGCTCCTCCCACTTGCAGGCTGAGGAGTCATGTGTCTAGATTCTAGACCAGGGTTCCGCTACTGGCGGCCCacaggtggttttatttggccccccaagtctTCTGAGCaacattttcattgttggacataaaaaatggtaaaaaataccaggaaatcagctataagtgattttaatttgggaAATCTGTCCCCAAATAtttccacgcataatagagagatcatatacaaatgtaagcaaggtttgaaatgatacTTTTTTTGTAAAACATTATGTacatttgggcttcttgcggtcaatttacagtctacaaattatttgtaagtGTGTTCTGGCCCcccgaccatccactcaagaaacAATTGACCCgctgctgaatctagttgatgatccctgctctaggccataatattgacttgcacATGTTCAGGACACGTCTGGGAATGTGTCTatcttacagagagagagagaaagactcatACAAAGATAGTTGGACAGAGCCCACCCTCACATGTGCAAAACACGTCAAAGGAACTAAAGACTTGTTTGCATGTCTCTCCTTGTTATCTGTGGGACTGAGTAACAGTGAGGAAATATTGATAGCTGCATCGTCTTCCTACGAAAACTTGATCATAAACACACTCAATTGAGGAcagatacaggtaactgccaaaataaaggaaacaccaacataaagtgtctttaTAGGGCGTTGGGCCAACACGagacagaacagcttcaatgcacatTGGCATagattcttccacaagaaattaaataatttggtgttttgttgatgatggaaaacgctgtctcagacgTCACTCCacaatctcccataagtgttcaattggctaattgaaaagctgttcaaaagagcACATTCTATTCCTTTtttttgtactccctgacgaaggccatgcagccgaaacgtgTCGGTTTTTaaaaactttgtttctattgaacatgccatactaataaaggcattttaatcaattatatgaagagtgccttggtcctcctttctttttgatgaccaatttaccccttttaccaaagagcaccttctatctaccaaaatgtactattgtgtaccttagtagcgcttcccttcctcctcttcaattgggttgagatgtGGTGACTAAGAcgtttcatgctcatcaaaccatttagTGATCAcccgtgccctgtggatgggagcACTGTTATCCTACGGGGGTATAGCCATGGTAACCAAAATATAGTCCCGCaaagcatttttatacatgaccctgagaattatgggatgttaattgcttaattaactcaggaaccacacctgtgtggaagcacctgctttcaatacaaTTTGTAtgcctcatttactcaagtgtttccattatttttgtagttacctgtatgtctgtatacatacagtatgtacaggttCAGGACTATTTACATATTTCCCGAAAATCTCCTCCACCAAAACCCACCGAAAATCTACCCCTCTCCTAGCATTTACTTCTCCCTGCCCTAACAATCCCATAATTAGCAGAGTTGCGGTCTCCTCCTTACCAAGGTACATATCCCATCAAAATAACACAAAAACCCTCATCCCTGTTATGCCACCTGTAGACCCATTCGAATAGACAGTAACAACAATAAACATGGGCAGTAATGACAAATGTTTCAAAATAATGCCACATTATAAAATCAGGAGGTTCAAGTGTGTCATTATATTAGGTGGGTTTTGTGATGGAAAATCAACGCTAGCATAATGGAATGGCCTTCACCAACATACTGTTGACAAGCATTTGAGAGCATGAAAGTAAATCTATCAGAAGTACAATTAATATTAAAAACATTATTAATCTAAATGGAATTACATggaccctgacagctatagaacAATATCACAAGACTTAAATGGGGATGACAATGTTTTCTGTTTTGCAGTTAAGCCAATTTGGTGGAATGCAATAGTATCAAGCTGCAGTTATAGACACAGAGAGGACCACCGCCTGTCACCTGAAGTAACATATTTCTACTGTTTTATATCTGCAAAGTCCCCACATTCATCAGGCAAAAGCAAGTACACAATGACAATAACATTGCACATCTGTGCATATTGTTCCTTTTTCATTGCAAAGAGTAGAAAATAACACAAAA

Function

NR:

description
mitogen-activated protein kinase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU774726 True 2186 lncRNA 0.39 1 17725231 17727416

Neighbor

gene id symbol gene type direction distance location
LOC110529511 LOC106571328 coding upstream 23756 17682064 ~ 17701475 (+)
LOC110529193 NA coding upstream 43243 17680205 ~ 17681988 (+)
LOC110529507 LOC106571333 coding upstream 799543 16921776 ~ 16925688 (+)
LOC110529505 LOC106571335 coding upstream 803534 16893102 ~ 16921697 (+)
LOC110529502 LOC106571295 coding upstream 899215 16793718 ~ 16826016 (+)
LOC110529515 LOC106571324 coding downstream 98020 17825436 ~ 17833210 (+)
LOC110529518 LOC106571322 coding downstream 118302 17845718 ~ 17857814 (+)
LOC110529519 LOC106571321 coding downstream 231735 17959151 ~ 18057345 (+)
LOC110531073 NA coding downstream 435289 18162705 ~ 18164856 (+)
LOC110529521 LOC106571319 coding downstream 546951 18274367 ~ 18311064 (+)
G680174 NA non-coding upstream 5056 17719693 ~ 17720175 (+)
G680218 NA non-coding upstream 7227 17713146 ~ 17718004 (+)
G680197 NA non-coding upstream 63744 17661183 ~ 17661487 (+)
G680157 NA non-coding upstream 84982 17613534 ~ 17640249 (+)
G680156 NA non-coding upstream 85112 17613104 ~ 17640119 (+)
G680224 LOC106571323 non-coding downstream 3589 17731005 ~ 17731344 (+)
G680231 NA non-coding downstream 12425 17739841 ~ 17740092 (+)
G680202 LOC106571323 non-coding downstream 13677 17741093 ~ 17741321 (+)
G680235 LOC106571323 non-coding downstream 19791 17747207 ~ 17747441 (+)
G680240 LOC106607725 non-coding downstream 24901 17752317 ~ 17752737 (+)
LOC110529493 LOC106571284 other upstream 1336895 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 1339286 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 2465241 15258311 ~ 15260331 (+)
G676919 NA other upstream 2618088 15105603 ~ 15107143 (+)
G681909 NA other downstream 1436520 19163936 ~ 19165640 (+)
G682611 NA other downstream 2001417 19728833 ~ 19729671 (+)
G683669 NA other downstream 2835459 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 2899534 20626950 ~ 20632899 (+)
G683845 NA other downstream 2979642 20707058 ~ 20707371 (+)

Expression


Co-expression Network