XLOC_002606



Basic Information


Item Value
gene id XLOC_002606
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8841698 ~ 8858568 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00005999
GGCTGttgatttgtgttctgaaaatgaaTAACAGTTATGTGTGTTTGGAATTACATATTGTTTTCATGCAGATCTCTGACTCACAGCAATTCCAAAGCGAATGATGCCGTCTCTGTCAAGTTTCTGAATGACTTCTTGACCTCTATACCCATCAGCAGATTCTCCATCTGTCACCACTACCAGCACCTTAGTGGCACCTGGACGCCCACCGTTTTCTGAAGAATAATCAAATCTAGAGGGACCTGACGGGAGACTCTGTAacagtaaattaacaACATTCGCTGCAACCCATCTGGAATACCTGAGAAACACTGCAAGCATGAAGATGCTTTGCAC
>TCONS_00006000
GGAGCATTTGGGATAAATTGGCTGttgatttgtgttctgaaaatgaaTAACAGTTATGTGTGTTTGGAATTACATATTGTTTTCATGCAGATCTCTGACTCACAGCAATTCCAAAGCGAATGATGCCGTCTCTGTCAAGTTTCTGAATGACTTCTTGACCTCTATACCCATCAGCAGATTCTCCATCTGTCACCACTACCAGCACCTTAGTGGCACCTGGACGCCCACCGTTTTCTGACATTCGCTGCAACCCATCTGGAATACCTGAGAAACACTGCAAGCATGAAGATGCTTTGCAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00005999 False 336 lncRNA 0.43 4 8841698 8858549
TCONS_00006000 True 299 lncRNA 0.44 3 8841698 8858568

Neighbor


gene id symbol gene type direction distance location
XLOC_002605 BX571955.1 coding downstream 163870 8675890 ~ 8677828 (-)
XLOC_002604 GOLPH3 coding downstream 168878 8660654 ~ 8672820 (-)
XLOC_002603 NA coding downstream 184021 8638921 ~ 8657677 (-)
XLOC_002602 NA coding downstream 220155 8618718 ~ 8621543 (-)
XLOC_002601 tctn1 coding downstream 406882 8416117 ~ 8434816 (-)
XLOC_002607 mocs2 coding upstream 88660 8947228 ~ 8957480 (-)
XLOC_002608 arl15b coding upstream 148006 9006574 ~ 9089636 (-)
XLOC_002609 CU694950.1 coding upstream 158153 9016721 ~ 9016837 (-)
XLOC_002610 si:dkeyp-41f9.3 coding upstream 246439 9105007 ~ 9115383 (-)
XLOC_002611 BX323017.1 coding upstream 282997 9141565 ~ 9141679 (-)
XLOC_002590 NA non-coding downstream 857954 7981119 ~ 7983744 (-)
XLOC_002585 BX294661.1 non-coding downstream 949014 7870627 ~ 7892684 (-)
XLOC_002612 NA non-coding upstream 286940 9145508 ~ 9146642 (-)
XLOC_002615 NA non-coding upstream 407485 9266053 ~ 9267711 (-)
XLOC_002618 BX248511.1 non-coding upstream 676047 9534615 ~ 9538335 (-)

Expression



Co-expression Network