XLOC_026064


Basic Information

Item Value
gene id XLOC_026064
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 7050519 ~ 7077819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052930
ctgagttaGACCATACGTGACTAGTTTAACCTTTCTGTATACATTACACAGCTAGGCTATATGTGACCACTTTAACATCTGTTTATCACCAGACAAGATCTGGATACATGATGATTTAACAAGATATATGTTTGGGTGAGAGGTAAGGCTGAAATATAGATGGTCAGAAATGAAGCATGAGCGTTGATGTAACTGTGATTCATCCTGTATGTCACTAATATCATTGTGGGCGTTACAACTAGATAAGAAGAGAACACACACTGCTATTGGTCTCACACTCTGCAGAAATCTGTGTTGCTG
>TCONS_00052931
gtgatatgtaaaatttggcccgcgacaatgttttttttttttttgcatctggccctcggcccaaaaagtttggacacccctgagttaGACCATACGTGACTAGTTTAACCTTTCTGTATACATTACACAGCTAGGCTATATGTGACCACTTTAACATCTGTTTATCACCAGACAAGATCTGGATACATGATGATTTAACAAGATATATGTTTGGGTGAGAGGTAAGGCTGAAATATAGATGGTCAGAAATGAAGCATGAGCGTTGATGTAACTGTGATTCATCCTGTATGTCACTAATATCATTGTGGGCGTTACAACTAGATAAGAAGAGAACACACACTGCTATTGGTCTCACACTCTGCAGAAATCTGTGTTGCTGTATGATTGTCTGatcttctttgcaaagaataaaactttaaaagacaC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0043412 macromolecule modification biological_process
GO:0006464 cellular protein modification process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0036211 protein modification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:1990234 transferase complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052930 False 300 lncRNA 0.39 2 7050519 7077740
TCONS_00052931 True 426 lncRNA 0.38 2 7060717 7077819

Neighbor

gene id symbol gene type direction distance location
XLOC_026062 BX000701.1 coding downstream 147544 6895555 ~ 6902975 (-)
XLOC_026061 mast1b coding downstream 281614 6720858 ~ 6768905 (-)
XLOC_026060 atg4db coding downstream 331287 6692369 ~ 6719232 (-)
XLOC_026059 si:ch73-59f11.3 coding downstream 442177 6600294 ~ 6608342 (-)
XLOC_026058 FP016106.1 coding downstream 453324 6556960 ~ 6597195 (-)
XLOC_026065 NA coding upstream 5688 7083507 ~ 7121370 (-)
XLOC_026066 BX005085.3 coding upstream 21129 7098948 ~ 7160717 (-)
XLOC_026067 BX005085.7 coding upstream 33885 7111704 ~ 7119493 (-)
XLOC_026068 BX005085.1 coding upstream 46093 7123912 ~ 7129057 (-)
XLOC_026069 BX005085.6 coding upstream 55569 7133388 ~ 7134113 (-)
XLOC_026056 NA non-coding downstream 521365 6525698 ~ 6529154 (-)
XLOC_026052 NA non-coding downstream 673581 6308693 ~ 6376938 (-)
XLOC_026050 NA non-coding downstream 810454 6237098 ~ 6240065 (-)
XLOC_026049 NA non-coding downstream 822373 6220081 ~ 6228146 (-)
XLOC_026077 NA non-coding upstream 267291 7345110 ~ 7346494 (-)
XLOC_026081 NA non-coding upstream 399984 7477803 ~ 7537078 (-)
XLOC_026082 NA non-coding upstream 401610 7479429 ~ 7493771 (-)
XLOC_026086 NA non-coding upstream 741634 7819453 ~ 7821608 (-)

Expression


Co-expression Network