G681658


Basic Information

Item Value
gene id G681658
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18788065 ~ 18789040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU776243
aactgtacgaTTGTATAATGTATGGGTTGTTCCACCATCTCGGTGCCATTTGAGAAGTGTAACTCCAAATTTTGGGGGGATTTcgcctaattttaacattctgtcatagagagcacatgttcaactttaTAAAAAATCTGTTTTCCCAACTCAAGAGGTTAAATTTAAAAACAAATTTACTATAGcaagtgcctattaagtgccaaataaagtgacACGGTTGACCGTAACATGGTTGACAATTTCATCTGAAATCAGCCATGAATCCCATCGTGACAGGCGGAATGGAATCATGTTGTGAGCATGTGGAGTGGCAATtaaatgcaagcttcacaaaaaaataagaaattgcTAAAACATTTCTAGTCTGTATATCTACGGCTAACAGGGTTGACTTTTATGCTCGACAGCTCAGTTTCCCAccacaaaacaacagaaaatggccaaaaagagtagaaccagctcacctgattttACACTaggatttgactattagatgttcaatgtttgtTTTGAGAAGGTAATAGTTTCACCACATTAAAAATAGAGTTGAGttcacataacagggttgaccttaaaatgagggataGACGTAAATGAAtaactaatcacatgaaataaataataatctacagaaatgactttgtcaaagcaacaaaataactagggctttacaatgatggtgaaacttGAAGAAATGTTGCGATTAAGTGGTTTGAAATCTTCCTATAAGTGACACAGGGTTAACTGAGGGACCTGTCAAAATACAGGATTTTCGCACATTAGCAAGCCTTTATTCATATAATAATCAGATTGGATTGAATTCtacatgtggtctatattaaggggcacttcatttaatatagcaggcttttaaaattcaaaattggtgcacaatttctacttaaaatatcccAGGGACGCAAAAGGCACTCGTGGAACAACCATATACCATCCATATAGTTTATATTTCTTT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU776243 True 976 lncRNA 0.35 1 18788065 18789040

Neighbor

gene id symbol gene type direction distance location
LOC110529528 LOC106571312 coding downstream 73245 18690451 ~ 18714820 (-)
LOC110529527 LOC106571313 coding downstream 100400 18676608 ~ 18687665 (-)
LOC110529198 LOC106571314 coding downstream 113869 18588818 ~ 18674196 (-)
LOC110529526 LOC106571316 coding downstream 200071 18582163 ~ 18587994 (-)
LOC110529520 marcs coding downstream 715471 18069152 ~ 18072594 (-)
LOC110529532 LOC106571305 coding upstream 87694 18876734 ~ 18883562 (-)
LOC110529199 ppil4 coding upstream 100056 18889096 ~ 18895190 (-)
LOC110529535 katna1 coding upstream 117248 18904660 ~ 18913467 (-)
LOC110529533 LOC106571304 coding upstream 124670 18913710 ~ 18922072 (-)
LOC110529538 LOC106571302 coding upstream 133193 18922233 ~ 18924820 (-)
G681586 NA non-coding downstream 158267 18626724 ~ 18629798 (-)
G681562 NA non-coding downstream 195159 18592597 ~ 18592906 (-)
G681525 LOC106607739 non-coding downstream 245417 18542190 ~ 18542648 (-)
G681517 NA non-coding downstream 261792 18526048 ~ 18526273 (-)
G681657 NA non-coding upstream 6534 18795574 ~ 18796382 (-)
G681672 NA non-coding upstream 10187 18799227 ~ 18799495 (-)
G681674 NA non-coding upstream 12723 18801763 ~ 18801963 (-)
G681675 NA non-coding upstream 15927 18804967 ~ 18805260 (-)
G681676 NA non-coding upstream 16420 18805460 ~ 18805663 (-)
G679471 NA other downstream 1673537 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 2157806 16625090 ~ 16630259 (-)
G679087 NA other downstream 2355051 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 4271537 14508329 ~ 14516528 (-)
G676178 NA other downstream 4499720 14287849 ~ 14288345 (-)
G681659 NA other upstream 2190 18791230 ~ 18792137 (-)
G684844 NA other upstream 2689726 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 3131387 21920427 ~ 21926307 (-)
G685953 NA other upstream 3369990 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 4827867 23614938 ~ 23659111 (-)

Expression


Co-expression Network