G681297


Basic Information

Item Value
gene id G681297
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18792365 ~ 18794013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU775858
tagtctgggtagccatttgattacttgttcaggagtgttatggcttgggggtaaaaacttttgcgaagccttttggtcctagacttggaactccggtaccgcttgccatgcagtagtagaaagaacattctatgactggggttgctggggtctttgacaatttttagggccttcctctgacagcgcctggtgtagaggtcctggatggcaggcagcttagccctagtaatgtactgggccgtacgcactaccctctggtgTGCCTTGTGTTCGGAagtccgagcagttgccgtaccaggtaaTTTTGGTAATGATGCAACCAGTGAGGATactcttgatgttgcagctgtagaaccttttgaggatctgaggacccataccaaatctttttagtttcctgagggggaataggcttgtgtcgtgccctcttcatgactgtcttggtgtgtttggaccattctagtttgttggtgatgtggacaccaaggaacttaaagctctcaacttcacggctgagccattgttttcctagacgtttccacttctcaATAACTGCAGTTATAGTTGATccgggcagaaatttgacgaactgacttgttggtagGTGGCATCCAATtgcggtgccatgttgaaagtcactgagctcttcagtaaggccattctactgccgatgtttgtctatggatattgcatggctgtgtgcttgattttatacacctgtcagcagcggGTGTTGCTGAATttgccaaatccactcatttaaaggggtgtccacataattctctgtgtgtgtgtatatatatatatatatctagacatgggtatatatacagttgaagtcagaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatagtagtaaacattccctgttttaggatcaccactttattttaagaatgtgaaatgtcagattagTAGTAAAGAGAAtgttttatttaagcttttatttctttcatcacattcccagtgggtcagaagtgtacatacactcaattagtatttggtagcattgcctttcaattgtttaacttgggtcaaacgtttcgggtagccttccacaagattcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctcctggctcgcacacactttttcagttctgcccacacattttctatgggattgaggtcagggctttgtgatgagcactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgtgaccaagctttaacttcctgactgatgtcttgagatgttacttcaatatatccacataattttccatcctcatgatggcatctattttgtgaagtgcaccagtccatcctgcagcaaagcacccccacaacatgatgctgccaccccatgcttcacggttggtatggtgttcttcggcttgtaagccggcttgtaacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttctacaaaaagtacaatcattgtccccatgtgca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU775858 True 1649 lncRNA 0.43 1 18792365 18794013

Neighbor

gene id symbol gene type direction distance location
LOC110529529 cdk19 coding upstream 6259 18716059 ~ 18786106 (+)
trnaa-ugc-23 NA coding upstream 55282 18737010 ~ 18737083 (+)
LOC110529197 LOC106571315 coding upstream 210315 18469380 ~ 18582050 (+)
LOC110529525 NA coding upstream 327622 18461630 ~ 18464743 (+)
LOC118965607 NA coding upstream 333070 18457768 ~ 18459295 (+)
LOC110529530 LOC106571309 coding downstream 12504 18806517 ~ 18876551 (+)
LOC110529536 LOC106571306 coding downstream 108222 18902235 ~ 18906394 (+)
LOC110529539 LOC106571303 coding downstream 130985 18924998 ~ 18936498 (+)
LOC118965498 lrp11 coding downstream 149146 18943159 ~ 18948106 (+)
LOC110529547 LOC106571352 coding downstream 363249 19157262 ~ 19161639 (+)
G681294 NA non-coding upstream 221 18791112 ~ 18792144 (+)
G681295 NA non-coding upstream 1460 18789470 ~ 18790905 (+)
G681288 NA non-coding upstream 3693 18786841 ~ 18788672 (+)
G681274 NA non-coding upstream 77545 18709194 ~ 18714820 (+)
G681268 NA non-coding upstream 103328 18688757 ~ 18689037 (+)
G681283 NA non-coding downstream 869 18794882 ~ 18796597 (+)
G681335 NA non-coding downstream 7381 18801394 ~ 18801743 (+)
G681336 NA non-coding downstream 9844 18803857 ~ 18804086 (+)
G681359 NA non-coding downstream 94625 18888638 ~ 18888906 (+)
G681369 NA non-coding downstream 118478 18912491 ~ 18912967 (+)
LOC110529505 LOC106571335 other upstream 1897530 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2404029 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2406420 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3532375 15258311 ~ 15260331 (+)
G676919 NA other upstream 3685222 15105603 ~ 15107143 (+)
G681909 NA other downstream 369923 19163936 ~ 19165640 (+)
G682611 NA other downstream 934820 19728833 ~ 19729671 (+)
G683669 NA other downstream 1768862 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1832937 20626950 ~ 20632899 (+)
G683845 NA other downstream 1913045 20707058 ~ 20707371 (+)

Expression


Co-expression Network