G681283


Basic Information

Item Value
gene id G681283
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 18794882 ~ 18796597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU775844
GATGTACTATGGCATTGACACATTTGGAGGAATTAGAGCTACAATTGTCTCTTTTGCTTGTTTCCTTTGCTGTGTTTTTGCTCAGTGTGATCAGATCTGCCTCCGCTGCTGCTTGGATTGTTTGTGTTTTTTACACTCAGTCTATAAAGTCCAGTGCACTTTCTCTCACATCTGTACCACCTCATAAGTTTTACAGGACtgaaacaatgcatttttttatATGTGGACAGTGCCTTTTTTAGTCTGAGTATTTATGTTTGAAGTTGCCATCACATGATGGGATCTTCAGGACTATGTTTATTTCTCTTTGTCCTACGCCTTCTTTTATAGTACATTTGAGTTTGTTtctatatatatcttttttttcaaATTCATGTAGTGTGTTATTTACTAAATTTGTTATTTCCAAAATTTGGCAACAAGCAGTTAAATATCAGCTTTGAGTTCAATGTATCCGATCTCGAATTTAATGAATGCAAAAAGTACAGCGTAGAATGATTTAGCTTTTTCTCCTCTAATCAATATTGTCCAAACACATTGTTGAAACTAAAACACTGTACATACGAACATGTTAATAATTTGTCATTGAATCATATTGATAAGTTAATTGTCTTTTAATGCACTGTTATTGCGGAAATATTTTGTGGTAAATGAAAAgtatatttgttattttttagacACTAAAGATATGGCAGGTAATGAAAGTTATAAGCCAGATAAAGCTCTTTTTAGGAGTTCTTACACGCAGTATAACTAATACCCAATGTTGCATGTCTTTCTGTCTTTTCCAATCCAGAACTTAAGCACTTATTGTCACCTTCTCAACAGTATGTACAGAAAGACAGACACTCCATTTGCAAAGTGCTCCTGTGGTGTATCAAAATGCCTTCCGAGATGTTTGTTTTAGGACTCTTGTACATGGAAAGAGACACTCACTTAGCCTGgtaccagatctgtttgtgccattCCAACTTTATTGTTTAGCATGACAATGAGCGACAAGGAGTTGGAaagatagcacaaacagactggtattCAGGCTAGTGCTCACTGATCTCCAAGATGAAACCAATTTACCCATTTAACCAGAGCATTTATGGTATGCGTTTCctgttttgaaagaaaatatcTGTTTGGCTATACTCTCACCATGCCATTTAAGTCTCACAGAAAGACAAAAGGCAACACAATTGTTTGTACATATTTATGTCACGGAGCTCTCCTCATCTCTCAGTTTTAGTAAGACATGAAGTGTTCCACTCTGTTGTTCTGTTCTCTACACTACATCCCCCAGGCTCCGTGGCATGAAACAACAGTGCTTTGCAGGTGTGGGTGTCTGTCAACTCTAAAGAATTTTCggtgtattttgtgtgtgtataaatgtgtgtgtgcacacagaaGACGTTCAAAATAGACACATGGCCTAAATGTATTGTGGTTCCATAGCTTTCATGAGTAAGGTAATGGCACAGAgcaagaaataaaaataatacatttcttaAGCGGCTTTTAGCTACTTTGTCCTAATTTCACTGTACAAATTGACTGTTAAATTAGATAAAAGttgtgtatatttattttatatcctCTATTGTAATAAAATCTCTTTTGCTTCAGATAGCAAGTCTGGTTTATTGCAATGTCCTGAGTTTGAGTTTTTGCAACTAGAGTATGAGAGATGTGTCAGTGTCACACTGTCTGATAACTCTGTGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU775844 True 1716 lncRNA 0.36 1 18794882 18796597

Neighbor

gene id symbol gene type direction distance location
LOC110529529 cdk19 coding upstream 8776 18716059 ~ 18786106 (+)
trnaa-ugc-23 NA coding upstream 57799 18737010 ~ 18737083 (+)
LOC110529197 LOC106571315 coding upstream 212832 18469380 ~ 18582050 (+)
LOC110529525 NA coding upstream 330139 18461630 ~ 18464743 (+)
LOC118965607 NA coding upstream 335587 18457768 ~ 18459295 (+)
LOC110529530 LOC106571309 coding downstream 9920 18806517 ~ 18876551 (+)
LOC110529536 LOC106571306 coding downstream 105638 18902235 ~ 18906394 (+)
LOC110529539 LOC106571303 coding downstream 128401 18924998 ~ 18936498 (+)
LOC118965498 lrp11 coding downstream 146562 18943159 ~ 18948106 (+)
LOC110529547 LOC106571352 coding downstream 360665 19157262 ~ 19161639 (+)
G681297 NA non-coding upstream 869 18792365 ~ 18794013 (+)
G681294 NA non-coding upstream 2738 18791112 ~ 18792144 (+)
G681295 NA non-coding upstream 3977 18789470 ~ 18790905 (+)
G681288 NA non-coding upstream 6210 18786841 ~ 18788672 (+)
G681274 NA non-coding upstream 80062 18709194 ~ 18714820 (+)
G681335 NA non-coding downstream 4797 18801394 ~ 18801743 (+)
G681336 NA non-coding downstream 7260 18803857 ~ 18804086 (+)
G681359 NA non-coding downstream 92041 18888638 ~ 18888906 (+)
G681369 NA non-coding downstream 115894 18912491 ~ 18912967 (+)
G681788 NA non-coding downstream 216229 19012826 ~ 19013045 (+)
LOC110529505 LOC106571335 other upstream 1900047 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2406546 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2408937 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3534892 15258311 ~ 15260331 (+)
G676919 NA other upstream 3687739 15105603 ~ 15107143 (+)
G681909 NA other downstream 367339 19163936 ~ 19165640 (+)
G682611 NA other downstream 932236 19728833 ~ 19729671 (+)
G683669 NA other downstream 1766278 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1830353 20626950 ~ 20632899 (+)
G683845 NA other downstream 1910461 20707058 ~ 20707371 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G30228 NA non-coding CM030123.1 CM030123.1 52067208 ~ 52067456 (-)
mexican tetra (Astyanax mexicanus) G28193 NA non-coding NC_035899.1 CM008302.1 54529793 ~ 54533491 (+)