G681851 (LOC106571351)


Basic Information

Item Value
gene id G681851
gene name LOC106571351
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19084516 ~ 19086756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU776451
ATGTATAAGTAATATTCTTCAAGAACCAATGGATAcgttaagtccaaaaatggatgtagcaactgctgattgtccCTTTTAATGACAAATGCATTCATAAAAGGTGAACGGAGGGCACTACTACAAGTGCAATTATTTTTTTGTGACAAGTTGTGTTGATTGAGACTTGAGACTCAGGAACAGGTCATCCTAGGACCAGCTTGGACAACACAGGCCAGCCCACCTAACATATGTGACCAATGAACACTGAGGTGCTGTTCACCTAGCTGTTTTCACATTACTGTGTAAATAATGTTCTGTCTGCTATTGCACATGACAGTAGTTACTATACGTTTTGTTGCTTGTTGTACAAAAAAAAGGTGTTGAGTACCTGTTCAGTTGTGACAGGCAAAGAGCCAAATTGCTTCACACTTCGGTCTGTTTCTTTGGCAAGGTGGTTGACATTCTGTTGTTTCTGCTGCAGCTGCTGTCTGAGCTCAGTTGTATCTTGTGGGGTTCCCAACTTATCCACAATACTCTGTATTTCAGATGTTTGTTGTGCGATCTTTTGGATGTTGGAGATTATCGTCTGAGTAAGCACATTTGGGTCCTGCACTTTTCCGTACTGGTAGGCCATCGTTGACACATTGGGAGTCTCCCCAATACCTTAATGAGTTCTGTCTTGACAGTCTGCTCGGCCTACACTCTGCTTCCTGATCGGTGTGTCATGTTTTTCTAGTCACATGATCCACTCTAAGCCGCTTTACAGCAAAGATCAAATCATAGTGCAAGAGGTGAAGTGAGAGGATTTACTTCGCCCAAAATCTTTCCACGAAAATAAGACCACGAAGTGAGGAATTTGTGCATGTAGGTCAATGAGaatgtcgaatttggtcaacacaAATGTAATTGATTGCTAATTTGTTACGTCTTGCTTATTTGAACGAATAGAAGTTTCATAATGGTTTGGCTGTTACAAATGCACATATATAATTGGACGCACATGGCCTTACGGTAACTTAAAAAACAACTTTATAACCTAACACAGCAAGCATAAACAAAAAAActcctgaaactagatcccccacATTCTGGTCTTgataagatgtgtttttaaatgttaggagaggttctcttctgcactgttcaaccaatccagaaAATGTGGACGAG

Function

NR:

description
syntaxin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU776451 True 1152 lncRNA 0.41 4 19084516 19086756

Neighbor

gene id symbol gene type direction distance location
LOC118965498 lrp11 coding upstream 136410 18943159 ~ 18948106 (+)
LOC110529539 LOC106571303 coding upstream 148018 18924998 ~ 18936498 (+)
LOC110529536 LOC106571306 coding upstream 178122 18902235 ~ 18906394 (+)
LOC110529530 LOC106571309 coding upstream 207965 18806517 ~ 18876551 (+)
trnaa-ugc-23 NA coding upstream 347433 18737010 ~ 18737083 (+)
LOC110529547 LOC106571352 coding downstream 70506 19157262 ~ 19161639 (+)
LOC110529202 lama2 coding downstream 288017 19374773 ~ 19537068 (+)
LOC110529203 NA coding downstream 448164 19534920 ~ 19539445 (+)
LOC110529551 LOC106607757 coding downstream 453862 19540618 ~ 19543748 (+)
LOC110529552 LOC106571356 coding downstream 505828 19592584 ~ 19632071 (+)
G681800 NA non-coding upstream 60635 19023676 ~ 19023881 (+)
G681790 NA non-coding upstream 70104 19014172 ~ 19014412 (+)
G681788 NA non-coding upstream 71471 19012826 ~ 19013045 (+)
G681369 NA non-coding upstream 171549 18912491 ~ 18912967 (+)
G681359 NA non-coding upstream 195610 18888638 ~ 18888906 (+)
G681863 NA non-coding downstream 8377 19095133 ~ 19095367 (+)
G681868 NA non-coding downstream 14025 19100781 ~ 19101032 (+)
G681874 NA non-coding downstream 23704 19110460 ~ 19110679 (+)
G681875 NA non-coding downstream 24660 19111416 ~ 19112214 (+)
G681877 NA non-coding downstream 27639 19114395 ~ 19114650 (+)
LOC110529505 LOC106571335 other upstream 2189681 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 2696180 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 2698571 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 3824526 15258311 ~ 15260331 (+)
G676919 NA other upstream 3977373 15105603 ~ 15107143 (+)
G681909 NA other downstream 77180 19163936 ~ 19165640 (+)
G682611 NA other downstream 642077 19728833 ~ 19729671 (+)
G683669 NA other downstream 1476119 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 1540194 20626950 ~ 20632899 (+)
G683845 NA other downstream 1620302 20707058 ~ 20707371 (+)

Expression


Co-expression Network