G682359


Basic Information

Item Value
gene id G682359
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 19637014 ~ 19638372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU777011
agttggtgaaccaggcgaggcagtcatttgagaaaccaaggctgttgagtctgccgatgagaatgtggtgatttacagtgtcgaaagccttggccaggtcgatgaatacggctgcacagtagtcTTTTATCGaaggcggttatgatatcgtttagtaccttgagtgtggctgaggtgcacccatgaccagctcggaaaccagattgtatagcggaggtacggtgggattctaaatggttggtgatctgtttgttaactgtagaatatatataggtctgtaacagtttgggtctagagtggctccccctttgaagagggggatgaccgcggcagctttccaatctttggggatctcagacgatacgaaagagtttgaacaggctagtaataggggttgtccagattgtctagcccagctgagttgtagggggtccagattttgcaattctttcagaacatcagctatctggatttggctTAAGGGGAAATAGGGAGGCTTAGGCAAGTtactgtggggggtgcagggctgttgataGTCCAGGCACAGCTGGGGCtgaagcggcaacggtgagagacttgtttctggaaaggtggatttttagaagtagaagcttCggctccgtgtcgacaaagggtccaggccaattggcaagagAAGTGTTGTAGTTGGTGTACTTAGTTTGCTAGCTGGGAGACAGGCCTAGCTCGGGGCTAACTGGCGCATGCTTCTGGACAAGGGTGTTAGCAACAATAGCTCCAGAGCTTGCGGCAGGAATCTGGTGATGTAGTTGAAAAGAGCAGTCCGATATGATCAGGGCTGGTAtcacgctgtgcagactggcaggtattatccGGGCTATCCAGGCTAAAACGGCAGGAGTCCGAGCTAGAGGTAAAGACCGCTAGCAgaggctaacaatgactaaatagctagtagctaattagctggctagccTGTGATGGCGGTTCTAGTTataaggtctaaaaaaaataGCTGATCCGtactacattgggtgaggcgggttgcaggaatgtatttattttgaaaatggacaaaagagattgaaatatatacaaaaaaaactgaaaaataccatatttacatgggATGAAAACAAACACATCTTACTGTTGTGCCATCttggattttttttttgattaagg
>TU777012
agttggtgaaccaggcgaggcagtcatttgagaaaccaaggctgttgagtctgccgatgagaatgtggtgatttacagtgtcgaaagccttggccaggtcgatgaatacggctgcacagtagtcTTTTATCGaaggcggttatgatatcgtttagtaccttgagtgtggctgaggtgcacccatgaccagctcggaaaccagattgtatagcggaggtacggtgggattctaaatggttggtgatctgtttgttaactgtagaatatatataggtctgtaacagtttgggtctagagtggctccccctttgaagagggggatgaccgcggcagctttccaatctttggggatctcagacgatacgaaagagtttgaacaggctagtaataggggttgtccagattgtctagcccagctgagttgtagggggtccagattttgcaattctttcagaacatcagctatctggatttggctTAAGGGGAAATAGGGAGGCTTAGGCAAGTtactgtggggggtgcagggctgttgataGTCCAGGCACAGCTGGGGCtgaagaaaatgttatagttagggatggaaatatCTGGATTTTTGGTGTCCTTCCTAAATCATGATGGATCGGCGCggctccgtgtcgacaaagggtccaggccaattggcaagagAAGTGTTGTAGTTGGTGTACTTAGTTTGCTAGCTGGGAGACAGGCCTAGCTCGGGGCTAACTGGCGCATGCTTCTGGACAAGGGTGTTAGCAACAATAGCTCCAGAGCTTGCGGCAGGAATCTGGTGATGTAGTTGAAAAGAGCAGTCCGATATGATCAGGGCTGGTAtcacgctgtgcagactggcaggtattatccGGGCTATCCAGGCTAAAACGGCAGGAGTCCGAGCTAGAGGTAAAGACCGCTAGCAgaggctaacaatgactaaatagctagtagctaattagctggctagccTGTGATGGCGGTTCTAGTTataaggtctaaaaaaaataGCTGATCCGtactacattgggtgaggcgggttgcaggaatgtatttattttgaaaatggacaaaagagattgaaatatatacaaaaaaaactgaaaaataccatatttacatgggATGAAAACAAACACATCTTACTGTTGTGCCATCttggattttttttttgattaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU777011 False 1164 lncRNA 0.47 3 19637014 19638372
TU777012 True 1178 lncRNA 0.46 3 19637014 19638372

Neighbor

gene id symbol gene type direction distance location
LOC110529552 LOC106571356 coding upstream 4943 19592584 ~ 19632071 (+)
LOC110529551 LOC106607757 coding upstream 93266 19540618 ~ 19543748 (+)
LOC110529203 NA coding upstream 97569 19534920 ~ 19539445 (+)
LOC110529202 lama2 coding upstream 99946 19374773 ~ 19537068 (+)
LOC110529547 LOC106571352 coding upstream 475375 19157262 ~ 19161639 (+)
LOC110529553 LOC106571358 coding downstream 25665 19664037 ~ 19672737 (+)
akap7 LOC106571361 coding downstream 194519 19832891 ~ 19863963 (+)
LOC118965655 NA coding downstream 237561 19875933 ~ 19875988 (+)
LOC118965499 NA coding downstream 289380 19927752 ~ 19930247 (+)
LOC101268947 il20r1b coding downstream 294061 19932433 ~ 19937792 (+)
G682413 NA non-coding upstream 17574 19619201 ~ 19619440 (+)
G682412 NA non-coding upstream 17820 19618939 ~ 19619194 (+)
G682332 NA non-coding upstream 144435 19492373 ~ 19492579 (+)
G682270 NA non-coding upstream 214621 19422120 ~ 19422393 (+)
G681902 NA non-coding upstream 467134 19167096 ~ 19169880 (+)
G682424 NA non-coding downstream 9381 19647753 ~ 19648041 (+)
G682425 NA non-coding downstream 9831 19648203 ~ 19648495 (+)
G682605 NA non-coding downstream 228728 19867100 ~ 19868203 (+)
G682735 NA non-coding downstream 299593 19937965 ~ 19939193 (+)
G681909 NA other upstream 471374 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 2742179 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 3248678 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 3251069 16384802 ~ 16385945 (+)
LOC110529464 LOC106571299 other upstream 4377024 15258311 ~ 15260331 (+)
G682611 NA other downstream 90461 19728833 ~ 19729671 (+)
G683669 NA other downstream 924503 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 988578 20626950 ~ 20632899 (+)
G683845 NA other downstream 1068686 20707058 ~ 20707371 (+)
G684314 NA other downstream 1438698 21077070 ~ 21078871 (+)

Expression


Co-expression Network