XLOC_026075 (si:ch1073-186o8.3)


Basic Information

Item Value
gene id XLOC_026075
gene name si:ch1073-186o8.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 7295464 ~ 7296189 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050980
GTCTCAGaaatcacatgatgatccacactggagagaaaccattcacatgcactcaatgtgggaagagtttcagacaccCCTCAAACCTTATtaatcacatgatgatccacactggagagaaaccgttcacatgttcccagtgtgggatgagtttcagacACACAACAAACTTTGGTAGACACATGttgacccacactggagagaaaacacacaaatgtgatcagTGCGGGAAAACATTTTTGATGGCTTCATACCTGAAGAGACACCTTCGAGTTCATACAGAGGAGAAGCCTTGTTCATGCACTgtttgtggaaagagtttcagagaTCAAGATGGTTTAAGGAgtcatcagaagatccacaccggtGTAAGAGAGCATATTTGCTTGGAGTGTGAGAAGACCTTTATTACGGCtgtaaaattgaaaatgcatgagaggattcacactggagagaaaccttacaagtgttcacactgtgacaagagttTCTGTCTGTTAGAAAGCCTGAAATCACAtcagagaactcacactggagagaaaccttacaagtgttcacactgcgacaagagattcagtttATCAGGAatcctgaaaacacatgagaggactcacactggagagaaaccttacatgtgttcacactgtgacaagagatTCAGTGCATTTGGAAACCTGAAAAGacatgagaggactcacactggagagaaaccttacatgtgttcac

Function

symbol description
si:ch1073-186o8.3 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094216

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050980 True 726 mRNA 0.43 1 7295464 7296189

Neighbor

gene id symbol gene type direction distance location
XLOC_026074 zgc:173577 coding downstream 11597 7276432 ~ 7283867 (-)
XLOC_026073 zgc:113102 coding downstream 24206 7263209 ~ 7271258 (-)
XLOC_026072 FO704858.1 coding downstream 40828 7245170 ~ 7254636 (-)
XLOC_026071 BX005085.4 coding downstream 124803 7152770 ~ 7170661 (-)
XLOC_026070 BX005085.5 coding downstream 148238 7141360 ~ 7147226 (-)
XLOC_026076 zgc:113443 coding upstream 2952 7299141 ~ 7343549 (-)
XLOC_026077 NA coding upstream 48921 7345110 ~ 7346494 (-)
XLOC_026078 zgc:173517 coding upstream 98985 7395174 ~ 7405452 (-)
XLOC_026079 CR847850.1 coding upstream 139613 7435802 ~ 7436932 (-)
XLOC_026080 znf1001 coding upstream 166979 7463168 ~ 7464250 (-)
XLOC_026065 NA non-coding downstream 174094 7083507 ~ 7121370 (-)
XLOC_026064 NA non-coding downstream 217645 7050519 ~ 7077819 (-)
XLOC_026058 FP016106.1 non-coding downstream 698269 6556960 ~ 6597195 (-)
XLOC_026056 NA non-coding downstream 766310 6525698 ~ 6529154 (-)
XLOC_026052 NA non-coding downstream 918526 6308693 ~ 6376938 (-)
XLOC_026081 NA non-coding upstream 181614 7477803 ~ 7537078 (-)
XLOC_026082 NA non-coding upstream 183240 7479429 ~ 7493771 (-)
XLOC_026086 NA non-coding upstream 523264 7819453 ~ 7821608 (-)
XLOC_026096 NA non-coding upstream 745523 8041712 ~ 8081361 (-)

Expression


Co-expression Network