G683070


Basic Information

Item Value
gene id G683070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20116719 ~ 20148567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU777819
TCCACAGTTTGATTTTATTATATTTACAGTCATTTTGAAAAGTAACATAAATAGAAAATTGCTAAATCTATTGAGAAGTAGAAGTCAGCGCTGAACCCAAACAAAACAACCAATGGAGTATTCAGGAATGTACTACAATGAGCAATTGAGTACCTGCAACAGTATTATACACAGCTCCCTTTGAATGTAGAGGAACTTATAGTACTGTAATGCCATATACAATCAaataattttatttttaattcagATCTTACATAACATATTGTCAAAAACTTTATCTGGGTCGAAAATGTTATGCTATATTTACAACGTTGAATCCTCTCTGTGAATGAAGGGGTCATGTAAGATTGCAGCAGTAAGTTATGTTGGTCTTCAACATTTCAGACTGGGTTATCTGGCACAGGGTGACAGTAACCGGTGTATACATCCACTATCCCCCAGAGgatgctggtgggaggagctataggacagcaggctcattgtaatggatggaatggaattaatggaactgatgatttctgtatgtgtgatgtgtttgataccattccaataTTCCATTCCAGCAactacaatgagcccgtcctcctatggctcctcccaccagcctcctctgccagCCACTCACATTAGAACAATTCACTGATAAAACACAACTGACTCTTCAATAGGTGTAATCTTGGATTTACTATGCAAGGAAGCATACTAGCGATCATATAGCTTTTACACAGTTGAATACCAATATACTGTCCCAGACACAAATGTTATGAAAAGGATAATGCTTAGGAATCAGAGTGCGCTCAGGGCGTTGTCAGATTGTACGTTCGTAAATTAAGAGAGGTACGCTCTTGGAGCGGTCAGAGAgtacactggacgctctggccgatgagTAGGTTTGATCCGAGTGTTCTGACCTCAGAATGTCAGTCAATCACCCAAGCGAACTAgactaatgttggctagcttgctagctacttccagacaaatAAGATAACACCTCACTCTGACAATTTTACTCCCCCTAGCAAAGCTGGTtatgctgttttcatgttatctagagcgttggtgactgtaactgtgctgctgtttgccAAAGTTCACTGACACCGGACATATTCAACTGGTGCtgagtgttcgtaaattcatcagttttTCTGCGCTCTgccacactcagacgagagtgctctgaactCGGAAGGTAGATAGCCAGATCGAATTTACGGAACGCACCCTTTATGTCTTCAGATGTTCTACGTGCTGTTACCATGGTGATGTTTAAACACGATTAGTAAGTGTATAGTAATGTTGCAAGGAAAACTTGCCTGAGTTTAGAAGATCATTTTATGCATCTCGAGGTTCCATTTGAATATTCTAGATCTTGGAAGGCCTGTTAGCATTACAATAATTTACAAAAGAGCCAACAGATTCACACCACTGAAATTGAAAACATAGAGAGGTCCTATGATATGGAGTTCTGGTCTACAAAGCTGAAGGATTTAGCGGGGAGATATACAAAAAAATGCTCACAGGGCTACCATTCAGTAGAAGAGTTACAGTATGACGATGCTATGACGATGATGACAGAACTGAGGCGGTCCTGATTGGTTCGGGGTTCCCGCGCTGTCCAATAGACAAAAGCACAAAGTTTCAGCCACAGCACAAACTCTACCACACATCTCCTTCTAGTCCTCACACCAGACTATCAGCAAGATATTGTTCCCAAGGTTTCCCTTGACACTTTGTACAGTTAGGAGTAAAAGAAAGGCCCACGTATACACAACATAACTTATTAGTGAACTATAAAAGAGTAAACACTGTCACACGTTAAAAAATGCCTAGAATTTAAAGAAGTTACATTTAGTTTTCTCTTTATCATTAGACTCAAGACTCCACTCTGTCTTAGAAAAGCACAAAATTCACATAACCTTACAGCGCAAAGACAGCTGCAGAAAGGCCAACGGTTACCTCTACCTAGTCTGGGATAATGTCCAGTGCTTTCAGAGATTAAATATTCAACAGATGTTGACACCTCATGCAAACAAATATGGTGTTATCCCCAAATTAACTTTTGAATTTATGTCCCAGAGACTAGCTCCAAAAATATGTATCTCTAGATAGCATCCAATATTTTGTCTAACTCATCTTTAACTATTGTTCTTGGCACTTTCAAGACAAATACATCCATCATAAGAAAAAGCAACTGGTTGCTTTTTCCATATTCAAAGTTTTATCCCATGCAATTGCCCAACTCAAGATGGAATTCCAACAGCCAAagtgtattgtaaacacatcatgGTTCACATGTACATTTATTTCTAATCAACTCTTTAGAATGGGCAATAGGACTACTTCTGATGACTAAAACCATATCGATCAGTTATTGAACATTGTTTAAGTGAAGAGTATTTCTAATCAAGTTAATCAGAACACATTGAAACTCTGCGACATCACTTAACTAGTGCTCTCAGAACTTGGCATTCCTTTTGTCCGGAATCTTGATCCATTTGAACACTGTCCAGAGGAATCAAATCAATGTTTTCCCTTAATATTTCAGTCATTCAGCTGTCAGAAAGAGAGCAAGAACCAGTATGGAGGAGAGATATGCATCCTGTAAGGTCAACACAGCCATAGGAGGGTGTTCTTGCACCTGCCTGGCCCCTCGTCCAGGCCAAGACTGTGACTCCACTGAGCAGAGGCTGAGCAGAGAGACAAAGGAAATCCAGTGTTTTTATGAGTCTTTGAGGTTAAAGTGTAGAGTCTCACTTCCTCCACACAGTTTGTAAGACACTGTATTATTTTAAGACATTTACGAAATGAAACAAAAAGTTAAAACGGTAGCTCTCTATTTGATTGGTACATAAGGCAGCTGTCCTTTGTTACTTT
>TU777820
TCCACAGTTTGATTTTATTATATTTACAGTCATTTTGAAAAGTAACATAAATAGAAAATTGCTAAATCTATTGAGAAGTAGAAGTCAGCGCTGAACCCAAACAAAACAACCAATGGAGTATTCAGGAATGTACTACAATGAGCAATTGAGTACCTGCAACAGTATTATACACAGCTCCCTTTGAATGTAGAGGAACTTATAGTACTGTAATGCCATATACAATCAaataattttatttttaattcagATCTTACATAACATATTGTCAAAAACTTTATCTGGGTCGAAAATGTTATGCTATATTTACAACGTTGAATCCTCTCTGTGAATGAAGGGGTCATGTAAGATTGCAGCAGTAAGTTATGTTGGTCTTCAACATTTCAGACTGGGTTATCTGGCACAGGGTGACAGTAACCGGTGTATACATCCACTATCCCCCAGAGgatgctggtgggaggagctataggacagcaggctcattgtaatggatggaatggaattaatggaactgatgatttctgtatgtgtgatgtgtttgataccattccaataTTCCATTCCAGCAactacaatgagcccgtcctcctatggctcctcccaccagcctcctctgccagCCACTCACATTAGAACAATTCACTGATAAAACACAACTGACTCTTCAATAGGTGTAATCTTGGATTTACTATGCAAGGAAGCATACTAGCGATCATATAGCTTTTACACAGTTGAATACCAATATACTGTCCCAGACACAAATGTTATGAAAAGGATAATGCTTAGGAATCAGAGTGCGCTCAGGGCGTTGTCAGATTGTACGTTCGTAAATTAAGAGAGGTACGCTCTTGGAGCGGTCAGAGAgtacactggacgctctggccgatgagTAGGTTTGATCCGAGTGTTCTGACCTCAGAATGTCAGTCAATCACCCAAGCGAACTAgactaatgttggctagcttgctagctacttccagacaaatAAGATAACACCTCACTCTGACAATTTTACTCCCCCTAGCAAAGCTGGTtatgctgttttcatgttatctagagcgttggtgactgtaactgtgctgctgtttgccAAAGTTCACTGACACCGGACATATTCAACTGGTGCtgagtgttcgtaaattcatcagttttTCTGCGCTCTgccacactcagacgagagtgctctgaactCGGAAGGTAGATAGCCAGATCGAATTTACGGAACGCACCCTTTATGTCTTCAGATGTTCTACGTGCTGTTACCATGGTGATGTTTAAACACGATTAGTAAGTGTATAGTAATGTTGCAAGGAAAACTTGCCTGAGTTTAGAAGATCATTTTATGCATCTCGAGGTTCCATTTGAATATTCTAGATCTTGGAAGGCCTGTTAGCATTACAATAATTTACAAAAGAGCCAACAGATTCACACCACTGAAATTGAAAACATAGAGAGGTCCTATGATATGGAGTTCTGGTCTACAAAGCTGAAGGATTTAGCGGGGAGATATACAAAAAAATGCTCACAGGGCTACCATTCAGTAGAAGAGTTACAGTATGACGATGCTATGACGATGATGACAGAACTGAGGCGGTCCTGATTGGTTCGGGGTTCCCGCGCTGTCCAATAGACAAAAGCACAAAGTTTCAGCCACAGCACAAACTCTACCACACATCTCCTTCTAGTCCTCACACCAGACTATCAGCAAGATATTGTTCCCAAGGTTTCCCTTGACACTTTGTACAGTTAGGAGTAAAAGAAAGGCCCACGTATACACAACATAACTTATTAGTGAACTATAAAAGAGTAAACACTGTCACACGTTAAAAAATGCCTAGAATTTAAAGAAGTTACATTTAGTTTTCTCTTTATCATTAGACTCAAGACTCCACTCTGTCTTAGAAAAGCACAAAATTCACATAACCTTACAGCGCAAAGACAGCTGCAGAAAGGCCAACGGTTACCTCTACCTAGTCTGGGATAATGTCCAGTGCTTTCAGAGATTAAATATTCAACAGATGTTGACACCTCATGCAAACAAATATGGTGTTATCCCCAAATTAACTTTTGAATTTATGTCCCAGAGACTAGCTCCAAAAATATGTATCTCTAGATAGCATCCAATATTTTGTCTAACTCATCTTTAACTATTGTTCTTGGCACTTTCAAGACAAATACATCCATCATAAGAAAAAGCAACTGGTTGCTTTTTCCATATTCAAAGTTTTATCCCATGCAATTGCCCAACTCAAGATGGAATTCCAACAGCCAAagtgtattgtaaacacatcatgGTTCACATGTACATTTATTTCTAATCAACTCTTTAGAATGGGCAATAGGACTACTTCTGATGACTAAAACCATATCGATCAGTTATTGAACATTGTTTAAGTGAAGAGTATTTCTAATCAAGTTAATCAGAACACATTGAAACTCTGCGACATCACTTAACTAGTGCTCTCAGAACTTGGCATTCCTTTTGTCCGGAATCTTGATCCATTTGAACACTGTCCAGAGGAATCAAATCAATTTTTTTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU777819 False 2880 lncRNA 0.40 2 20116719 20119620
TU777820 True 2541 lncRNA 0.39 3 20116719 20148567

Neighbor

gene id symbol gene type direction distance location
LOC110529562 NA coding upstream 56284 20051540 ~ 20060435 (+)
LOC101268947 il20r1b coding upstream 178927 19932433 ~ 19937792 (+)
LOC118965499 NA coding upstream 186472 19927752 ~ 19930247 (+)
LOC118965655 NA coding upstream 240731 19875933 ~ 19875988 (+)
akap7 LOC106571361 coding upstream 254693 19832891 ~ 19863963 (+)
LOC110529565 NA coding downstream 146072 20294639 ~ 20379353 (+)
LOC110529573 serc1 coding downstream 322590 20471157 ~ 20477447 (+)
LOC110529577 LOC106571536 coding downstream 486838 20635405 ~ 20637793 (+)
LOC110529580 tbc1d32 coding downstream 506592 20652867 ~ 20682999 (+)
LOC110529582 LOC106571376 coding downstream 676947 20825514 ~ 20992358 (+)
G683065 NA non-coding upstream 6301 20110137 ~ 20110418 (+)
G683024 NA non-coding upstream 80407 20036009 ~ 20036312 (+)
G683017 NA non-coding upstream 86195 20030178 ~ 20030524 (+)
G683015 NA non-coding upstream 87706 20028813 ~ 20029013 (+)
G682972 NA non-coding upstream 113766 20002672 ~ 20002953 (+)
G683147 NA non-coding downstream 63667 20212234 ~ 20234414 (+)
G683193 NA non-coding downstream 121554 20270121 ~ 20270348 (+)
G683196 NA non-coding downstream 130480 20279047 ~ 20279250 (+)
G683197 NA non-coding downstream 130911 20279478 ~ 20279706 (+)
G682611 NA other upstream 387048 19728833 ~ 19729671 (+)
G681909 NA other upstream 951079 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 3221884 16893102 ~ 16921697 (+)
LOC110529493 LOC106571284 other upstream 3728383 16387411 ~ 16390869 (+)
G678417 LOC106571283 other upstream 3730774 16384802 ~ 16385945 (+)
G683669 NA other downstream 414308 20562875 ~ 20563434 (+)
G683757 LOC106571373 other downstream 478383 20626950 ~ 20632899 (+)
G683845 NA other downstream 558491 20707058 ~ 20707371 (+)
G684314 NA other downstream 928503 21077070 ~ 21078871 (+)
LOC110529590 LOC106571388 other downstream 1270781 21406192 ~ 21424564 (+)

Expression


Co-expression Network