G683766


Basic Information

Item Value
gene id G683766
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20649054 ~ 20650803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU778641
TTATTAATATGTACTAATTGAAATGTACCAATGAGCGCTCAGTCAAAGACCCTCTTTATCTGTTAATTTGGACCAGTGAGTACATTGATACGTGAAGGCTCATGAGGCCCAGATATCAATAGCCATTCCAATAACAGACCTTTCCAATCTGGTGGGAACCAAGGACTTGACCTTGTTCAATCCCTAAACATTGATTGTTTTATTCAGAAGGCACATGAAGATTGTTTTCCTACCTTTTCATTACATTCAGTTTGCTGTGCCACTATTTCATTCAGGAACATTTCTTGAATACATACTCAAAATGAAATCTTTGCCTATCAAAGTTTTCTTTAGGAAAAACCTCCCACTGCAGATAGTAGTCTACTTTTCATCAAGGCTGTATGCGTAGTCTATTGGTAAACTGGTATGGTCACATAATGTTATAATTATCTGCCATTACTTTTTGTCAACGTCAGCAATCCCATCCATCCTCACAAAGCAGGTGATATATCTCTAATGTAAAGCTCATTTGATTAACCTCACTGTCTATGCATTATGACTGTCTAATACCAACAACTAACCAGAGGCAATTAACCATTACATCTCACTTTGTAATGTCATGAATGCAATTTTCACAAATCTggtatttgatcatgtaattaTCATAAGTGAATTGTTTGCTTTTTCAATTTACCAAGGGACAAGCCTGAAGAAAGGTCCGAGCTCAGTCTCTCAGGATGGTGATGTCAGGGTGAAGATGAGAACCTTCTCAACCTTCCCCTCTTATGGACGAGGCACCATCCAAACCACAACAAAGACTACATATCCCACCTCTTAGGCATGACACCATTCTATGACCTGTGGTAGTGCTGTGGCCCAAGATGAAACCTTAAAGTGATCATTTAGGTTCCTATGATACCTAGTGTACAGCTATACTAAACATAGTATGTCAATATTCAAGAAATTCAAGAAGTTTGACAAATGATTTAAAAGTCAGAGACACTGCCAACCCGCAACAAGATTTAATTGTCTATAGATCAAGTATTGATTTTCATACACAACATGCATTTTATGTGTCTAATGATTAGACATGTTGTAATTTCTTTGTCAATAGTTACTTTCTAATTGTTccatcaattttttttttttttttttacagcagacTTTGCTTCACATGTTTGTAATCTTCACAATAACAATGGCTGACCTAATTTTTCCAAAATAATATGTCAACAGTGTTGGTCCTTCTAAGTGTAAATGATTTACTAAACTATCTTGTCTTTGTTGATTAAAAACAGATTTTTGTTCAAAAATGAAATCCTCATAAAGTACATTAACAAATCATTATTTAGTAAGGATTATCTTTATTGAGCTACATTTTGTATTGTGCTATGCATAACATATGCATATTCACCAAGCATAAACCAGATGGAATGTCATTCACAAGCACACAACTTATTTCTGCAATCACATCACCAATAATTAGAATCCCAGCACCAtcagtaaataaaaaataactcaTTTCAAAATGTATTCTCAAGTACACTGTAAGTTGTCAAAACAACTGGCTTTACATAGGAACGCCAGTTAAACACCTCAAAGACCACAGTTCCTCAAATAAACATCTCAAATCACTGCAAAAAAGATCTCCATGACCTCACATATCTGTGCATTTCAAAGACGTCATCAACATAATTTGGGAGCGACACTCCTGGAGATTATTTTGTATTACATTCACTGAATAAATATAGATTTTTAAGATACAATTAtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU778641 True 1750 lncRNA 0.35 1 20649054 20650803

Neighbor

gene id symbol gene type direction distance location
LOC110529577 LOC106571536 coding upstream 11261 20635405 ~ 20637793 (+)
LOC110529573 serc1 coding upstream 171607 20471157 ~ 20477447 (+)
LOC110529565 NA coding upstream 269701 20294639 ~ 20379353 (+)
LOC110529562 NA coding upstream 588619 20051540 ~ 20060435 (+)
LOC101268947 il20r1b coding upstream 711262 19932433 ~ 19937792 (+)
LOC110529580 tbc1d32 coding downstream 4356 20652867 ~ 20682999 (+)
LOC110529582 LOC106571376 coding downstream 174711 20825514 ~ 20992358 (+)
LOC110529583 LOC106571378 coding downstream 359518 21010321 ~ 21116297 (+)
mcm9 LOC106571380 coding downstream 466576 21117379 ~ 21136825 (+)
LOC110529585 LOC106571383 coding downstream 492266 21143069 ~ 21230110 (+)
G683759 NA non-coding upstream 14658 20633481 ~ 20634396 (+)
G683700 NA non-coding upstream 62236 20586607 ~ 20586818 (+)
G683671 NA non-coding upstream 85264 20563487 ~ 20563790 (+)
G683633 NA non-coding upstream 117979 20530859 ~ 20531075 (+)
G683599 NA non-coding upstream 139942 20508899 ~ 20509112 (+)
G683783 NA non-coding downstream 36107 20686910 ~ 20687208 (+)
G683828 NA non-coding downstream 43674 20694477 ~ 20694735 (+)
G683849 NA non-coding downstream 58030 20708833 ~ 20709047 (+)
G683850 NA non-coding downstream 62533 20713336 ~ 20713774 (+)
G683757 LOC106571373 other upstream 16155 20626950 ~ 20632899 (+)
G683669 NA other upstream 85620 20562875 ~ 20563434 (+)
G682611 NA other upstream 919383 19728833 ~ 19729671 (+)
G681909 NA other upstream 1483414 19163936 ~ 19165640 (+)
LOC110529505 LOC106571335 other upstream 3754219 16893102 ~ 16921697 (+)
G683845 NA other downstream 56255 20707058 ~ 20707371 (+)
G684314 NA other downstream 426267 21077070 ~ 21078871 (+)
LOC110529590 LOC106571388 other downstream 768545 21406192 ~ 21424564 (+)
G685215 NA other downstream 1274314 21925117 ~ 21926356 (+)
G685311 NA other downstream 1433071 22083874 ~ 22084224 (+)

Expression


Co-expression Network