G683850


Basic Information

Item Value
gene id G683850
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20713336 ~ 20713774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU778736
ggtcatcagtacctagttgactgggaggggtacggtcctgaggagaggagttgggttccctctcgggacgtgctggaccgtgcgctgattgatgatttcctccgttgccgccaggtttcctccttgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtactgtcatgttgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgtgttaggttaccttttctcccccgctttcccccagctgtcccttgtctcctctaactacccattcaccccgttccccacctgttcccttttttccctctgattaggtccctatatctctctctgtttctgctcctgtccttgtcggattcttgtttgtttgtgtcattcatgcctgaaccagactgtcgtcatgtttgctgtaaccttgtc

Function

NR:

description
chromo domain-containing protein cec-1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU778736 True 439 lncRNA 0.54 1 20713336 20713774

Neighbor

gene id symbol gene type direction distance location
LOC110529580 tbc1d32 coding upstream 30337 20652867 ~ 20682999 (+)
LOC110529577 LOC106571536 coding upstream 75543 20635405 ~ 20637793 (+)
LOC110529573 serc1 coding upstream 235889 20471157 ~ 20477447 (+)
LOC110529565 NA coding upstream 333983 20294639 ~ 20379353 (+)
LOC110529562 NA coding upstream 652901 20051540 ~ 20060435 (+)
LOC110529582 LOC106571376 coding downstream 111740 20825514 ~ 20992358 (+)
LOC110529583 LOC106571378 coding downstream 296547 21010321 ~ 21116297 (+)
mcm9 LOC106571380 coding downstream 403605 21117379 ~ 21136825 (+)
LOC110529585 LOC106571383 coding downstream 429295 21143069 ~ 21230110 (+)
LOC110529590 LOC106571388 coding downstream 692418 21406192 ~ 21424564 (+)
G683849 NA non-coding upstream 4289 20708833 ~ 20709047 (+)
G683828 NA non-coding upstream 18601 20694477 ~ 20694735 (+)
G683783 NA non-coding upstream 26128 20686910 ~ 20687208 (+)
G683766 NA non-coding upstream 62533 20649054 ~ 20650803 (+)
G683885 NA non-coding downstream 20934 20734708 ~ 20734910 (+)
G683903 NA non-coding downstream 35925 20749699 ~ 20749914 (+)
G683924 NA non-coding downstream 48336 20762110 ~ 20762365 (+)
G683925 NA non-coding downstream 48690 20762464 ~ 20762834 (+)
G683933 NA non-coding downstream 53986 20767760 ~ 20768030 (+)
G683845 NA other upstream 5965 20707058 ~ 20707371 (+)
G683757 LOC106571373 other upstream 80437 20626950 ~ 20632899 (+)
G683669 NA other upstream 149902 20562875 ~ 20563434 (+)
G682611 NA other upstream 983665 19728833 ~ 19729671 (+)
G681909 NA other upstream 1547696 19163936 ~ 19165640 (+)
G684314 NA other downstream 363296 21077070 ~ 21078871 (+)
G685215 NA other downstream 1211343 21925117 ~ 21926356 (+)
G685311 NA other downstream 1370100 22083874 ~ 22084224 (+)
LOC110529616 LOC106586086 other downstream 1709284 22419790 ~ 22433035 (+)

Expression


Co-expression Network