G684254


Basic Information

Item Value
gene id G684254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 20994448 ~ 20994661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU779148
ctatattcccagtcatgtgaaatccatagattaacgCCTAATTTATGTATTTCTagtgactgatttcctcatatgaactgtaactcagtaaaacctttgaaattgttgcatgttgcatttatatttttcagTAACGTTAACTATTTCCAACCTAGACCAACTAAATGTCTCTTTGGCCATATACTTGATATTTATAGCTGATTATGTATGTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU779148 True 214 lncRNA 0.31 1 20994448 20994661

Neighbor

gene id symbol gene type direction distance location
LOC110529582 LOC106571376 coding upstream 2090 20825514 ~ 20992358 (+)
LOC110529580 tbc1d32 coding upstream 311449 20652867 ~ 20682999 (+)
LOC110529577 LOC106571536 coding upstream 356655 20635405 ~ 20637793 (+)
LOC110529573 serc1 coding upstream 517001 20471157 ~ 20477447 (+)
LOC110529565 NA coding upstream 615095 20294639 ~ 20379353 (+)
LOC110529583 LOC106571378 coding downstream 15660 21010321 ~ 21116297 (+)
mcm9 LOC106571380 coding downstream 122718 21117379 ~ 21136825 (+)
LOC110529585 LOC106571383 coding downstream 148408 21143069 ~ 21230110 (+)
LOC110529590 LOC106571388 coding downstream 411531 21406192 ~ 21424564 (+)
LOC110531076 LOC106571392 coding downstream 718499 21713160 ~ 21722182 (+)
G684021 NA non-coding upstream 169857 20824370 ~ 20824591 (+)
G683994 NA non-coding upstream 188305 20805837 ~ 20806143 (+)
G683992 NA non-coding upstream 190134 20803967 ~ 20804314 (+)
G683990 NA non-coding upstream 191346 20802260 ~ 20803102 (+)
G683933 NA non-coding upstream 226418 20767760 ~ 20768030 (+)
G684267 NA non-coding downstream 13924 21008585 ~ 21008850 (+)
G684269 NA non-coding downstream 14296 21008957 ~ 21009317 (+)
G684314 NA non-coding downstream 82409 21077070 ~ 21078871 (+)
G684400 NA non-coding downstream 127477 21122138 ~ 21122872 (+)
G684413 NA non-coding downstream 192521 21187182 ~ 21190169 (+)
G683845 NA other upstream 287077 20707058 ~ 20707371 (+)
G683757 LOC106571373 other upstream 361549 20626950 ~ 20632899 (+)
G683669 NA other upstream 431014 20562875 ~ 20563434 (+)
G682611 NA other upstream 1264777 19728833 ~ 19729671 (+)
G681909 NA other upstream 1828808 19163936 ~ 19165640 (+)
G685215 NA other downstream 930456 21925117 ~ 21926356 (+)
G685311 NA other downstream 1089213 22083874 ~ 22084224 (+)
LOC110529616 LOC106586086 other downstream 1428397 22419790 ~ 22433035 (+)

Expression


Co-expression Network