G684314


Basic Information

Item Value
gene id G684314
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21077070 ~ 21078871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU779214
TTCGCTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctcttctatctAATGTTCACTGTTAGCtggcccccctctctcttctatctAATGTTCACTGTTAGTcggccccccctctctcttctatctAATGTTCACTGTTAGTCGGCCCCCGTCTCTCTTCTAtctaatgtTCACTGTTAGTCgacccccgtctctctcctctctaatgtTCACTGTTAGT
>TU779215
TTCGCTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctcttctatctAATGTTCACTGTTAGCtggcccccctctctcttctatctAATGTTCACTGTTAGTcggccccccctctctcttctatctAATGTTCACTGTTAGTCGGCCCCCGTCTCTCTTCTATCTAATGTTCACTGTTAGTCTGCCCcccgtctctcctctctaatgtTCACTGTTAGTCggcccccgtctctctcctctctaatgtTCACTGTTAGTCGg
>TU779216
TTCGCTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggggcacccgtctctctcctctctaatgtTCACTGTTAGTCggcccccgtctctctcctctctaatgtTCACTGTTAGTCGGCCcccgtctctcttctctctaatgTTCACTGTTAGTCGGCCcccgtctctcttctctctaatgTTCACTGTTAGTCggcccccgtctctctcctctctaatgtTCACTGTTAGTCGGCCcccgtctctcttctctctaatgTTCACTGTTAGTCggcccccgtctctctcctctctaatgtTCACTGTTAGTCGGCCcccgtctctcttctctctaatgTTCACTGTTAGTCGGCCcccgtctctcttctctctaatgTTCACTGTTAGTcggccccccttctctctcctctgtaatgTTCACTGTTAGTCGG
>TU779217
TTCGCTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctctcctctctaatgtTCACTGTTATTCggcccccgtctctcttctatctAATGTTCACTGTTAGCtggcccccctctctcttctatctAATGTTCACTGTTAGTcggccccccctctctcttctatctAATGTTCACTGTTAGTCGGCCCCCGTCTCTCTTCTAtctaatgtTCACTGTTAGTCgacccccgtctctctcctctctaatgtTCACTGTTAGTCggcccccgtctctctcctctctaatgTTCACTGTTATTCggcccc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU779214 False 286 lncRNA 0.49 3 21077070 21077593
TU779215 False 327 lncRNA 0.50 3 21077070 21077791
TU779216 False 486 TUCP 0.52 2 21077070 21078871
TU779217 True 332 lncRNA 0.51 4 21077070 21077873

Neighbor

gene id symbol gene type direction distance location
LOC110529582 LOC106571376 coding upstream 84712 20825514 ~ 20992358 (+)
LOC110529580 tbc1d32 coding upstream 394071 20652867 ~ 20682999 (+)
LOC110529577 LOC106571536 coding upstream 439277 20635405 ~ 20637793 (+)
LOC110529573 serc1 coding upstream 599623 20471157 ~ 20477447 (+)
LOC110529565 NA coding upstream 697717 20294639 ~ 20379353 (+)
mcm9 LOC106571380 coding downstream 39506 21117379 ~ 21136825 (+)
LOC110529585 LOC106571383 coding downstream 65196 21143069 ~ 21230110 (+)
LOC110529590 LOC106571388 coding downstream 328319 21406192 ~ 21424564 (+)
LOC110531076 LOC106571392 coding downstream 635287 21713160 ~ 21722182 (+)
LOC110529595 LOC106571393 coding downstream 694190 21772063 ~ 21774545 (+)
G684269 NA non-coding upstream 67753 21008957 ~ 21009317 (+)
G684267 NA non-coding upstream 68220 21008585 ~ 21008850 (+)
G684254 NA non-coding upstream 82409 20994448 ~ 20994661 (+)
G684021 NA non-coding upstream 252479 20824370 ~ 20824591 (+)
G683994 NA non-coding upstream 270927 20805837 ~ 20806143 (+)
G684400 NA non-coding downstream 44265 21122138 ~ 21122872 (+)
G684413 NA non-coding downstream 109309 21187182 ~ 21190169 (+)
G684547 NA non-coding downstream 310130 21388003 ~ 21388217 (+)
G684548 NA non-coding downstream 311998 21389871 ~ 21392904 (+)
G684554 LOC106571387 non-coding downstream 325077 21402950 ~ 21403576 (+)
G683845 NA other upstream 369699 20707058 ~ 20707371 (+)
G683757 LOC106571373 other upstream 444171 20626950 ~ 20632899 (+)
G683669 NA other upstream 513636 20562875 ~ 20563434 (+)
G682611 NA other upstream 1347399 19728833 ~ 19729671 (+)
G681909 NA other upstream 1911430 19163936 ~ 19165640 (+)
G685215 NA other downstream 847244 21925117 ~ 21926356 (+)
G685311 NA other downstream 1006001 22083874 ~ 22084224 (+)
LOC110529616 LOC106586086 other downstream 1345185 22419790 ~ 22433035 (+)
G685469 NA other downstream 1368898 22446771 ~ 22448073 (+)

Expression


Co-expression Network