G684767


Basic Information

Item Value
gene id G684767
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21421794 ~ 21424539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU779778
AAAAGCAAAGAAAACAAGGTCAGGTAAAACCTGTGTCTAAAAATGGAGCCTTTGTTTCTTCAGTCAGAAGCACTGTCAACAAGCGATGTGAACATTCTCTGTGACATGCTGCTGTCTAGTGCCACTCTGTGTGTCATTTCACTAACGTTAAGCAGGGAACTGTCCTTGGCTTGGACAAGTCCTTCATGAAGAGCATTTGAGTTTGATCAAAGCGCAATTtatactgatcaaaaatataaacgcaacatgcaacattttaactgattttactgagttgcagttcataaggaaatcagtgaattgaaataaataactgaggccctaatctatggatttcacatgactgggcaggggcacagccatgggtgggcctgggaggggaTAGGTCCACCCATTTGGGAGCCACgcccaaccaatcagaatttgtttttccccacaaaaggactttattacagaaataaatactcagtttcatcagctgtccaggtggctggtctcagacgatcccgcagTTACACGTggggttgtgaggctggttgaatGTACTGTGAAATTCTCAAATACGACAttgaaggtggcttatggtagagaaattaacattcaagtccctggcatcagctctggtggacattcctgccgcttcttgatatgccatacctgtcaggtggatggatcttggcaaaggagaaatgttcactaataGGGATGCAAACcatttttagagaaataagctttttgtgcatatggaaaaattctaggatcttttatttcagctcatgaaacatgagaccaacactttacatattgcatttacatttttgtttagtgtagataaaaaattaaataaacagTAGCTGCAGATTAGCTATGAATGAGGTCAAGATTGGAACACAAGGCTGCAGGTTGTCATCATGACCACCTCAACCCCTCAGCCCTCAGTATGGGGGTACATTTGTAATGAGTACAGTAGAGAGATGCTAGCTACTACAGTAGCGAAATTCCAATATGAATCTACAGAAATGCACAGATTTCAAGTTTAAAAACAgctaatatatttatatagtataCACAGAACTTTTTATAGTCTCAAAGATGATAGTTTGTGGATATTTTGGAATTGATCTTCAGTGCATAAAAACCTGTTTGCATGCACACAAACCTTTTGGTtgtgtgaaattcatagattaaaGCTGGAAACTCCCATCCCTCAGACAGGTTGATAACCCTCTGACAGCTCTTAATATCAGAATACGGTGCAGCCGACACGGCCGTCAGTCATCTTTTGGGTCCTAACGAGTCTGAAAACACAGCCACTGATACAAGATCACAGCACACCAGTAATAGAGAAGGGTGGGAAAACAATACAGCGAAGGAACTTCAGGGACAAGCAAGATATGTACTTTACGTGAAAAGGGACAAGAACAAAGGCGGTAAAGGAGAAATCCTAGTTGAGTTTAAAGATATTGCACTTCTAATTTCTGGCAACGGAGCTtgtggtaatatatatatatatatatatatatatatatttgtgaaaGAAATACTTCCAGAGTTATCAGTAACTTTGTCATACACAACTTGTTTTCAGAGAACATTAGCCAGTGTGTGTGCACCTCAGAGTAAACGGCAAGGACTTTGAACAGTATGAAGACAACGAGGTAGCACACAAGATGCATTGCTCAGAGTGCCCCATCTTTAAATGAAAATGTTGTGTAATGAGGACTATGGTAACATTCTGTGATACCATTGATCAAACACAGAGGGCACACCCTAATAGTTGAAATCCTTTGAATTCTGACAAGTCTTTCCCTGACTGTACATTCTGTTTTGACATCCAATAGGTGAATGTGTCTGCTCTATATTCTGAACACTTGAGGGTTTGACATGGGAGTAAACATTGAGATCCTAATCAGTGGTAGAAGATGAACATTACAGTTGAGGGAAACCCCTCTACACAAGCTACATGTGTAAGAGATAAATAAAAGCCAACATTTATGAAGGGAGAAGATTTCCTCAGCCTAGTAAAACAATATTCATTACCAGCAGGGCAGTCTCACAGTAAGGAAGTGTCGTCTTAATGTGGGGGCAAATAGGATCAGTAACTATACACACAGAAAAATACCACTTAGTCCATCCATTCAATCATCTAGACCCACATCTTCTCCTCAATCTGTGGTCTTCTCTCATTGGCTCCTCACCGTTGCAGAAAGATAGTAACAGGAATTCAAAAGAGCTTTGAGTGTGTTTCCATGACGACTTAATGATGAGTCGAATTTATCCCCATTTCTCCTCTCATACATCCTCCAGTGGACTCAGATGCAGTCCAGTCTCTCAAATCTCATAGAGTATAGTACAAAAATACATGTGCAGTCCAGTCTTTCAGctcttctccatcctcctctgcACCCCTCCCCATTCCTCCAGATCCTCCCCGCCGCTCTAGGAGGTGCTCTTTCCGGACCCAGCAGTCTTAGACGGGGTCTCCTCCGATGGCGTCTCACTGAAGATCCCTGTGTCTCCGTTCTCTGGGCCGTCACCCACGGACATCTTTTC
>TU779779
AGGTTTCATGTTATACATTAACTACAGATAAGACATTTATACCAAATTGTCCAACATTTCAGAAACACATTTtatgacaaaaataaataattgtattCCTCAAAAGCAAAGAAAACAAGGTCAGGTAAAACCTGTGTCTAAAAATGGAGCCTTTGTTTCTTCAGTCAGAAGCACTGTCAACAAGCGATGTGAACATTCTCTGTGACATGCTGCTGTCTAGTGCCACTCTGTGTGTCATTTCACTAACGTTAAGCAGGGAACTGTCCTTGGCTTGGACAAGTCCTTCATGAAGAGCATTTGAGTTTGATCAAAGCGCAATTtatactgatcaaaaatataaacgcaacatgcaacattttaactgattttactgagttgcagttcataaggaaatcagtgaattgaaataaataactgaggccctaatctatggatttcacatgactgggcaggggcacagccatgggtgggcctgggaggggaTAGGTCCACCCATTTGGGAGCCACgcccaaccaatcagaatttgtttttccccacaaaaggactttattacagaaataaatactcagtttcatcagctgtccaggtggctggtctcagacgatcccgcagTTACACGTggggttgtgaggctggttgaatGTACTGTGAAATTCTCAAATACGACAttgaaggtggcttatggtagagaaattaacattcaagtccctggcatcagctctggtggacattcctgccgcttcttgatatgccatacctgtcaggtggatggatcttggcaaaggagaaatgttcactaataGGGATGCAAACcatttttagagaaataagctttttgtgcatatggaaaaattctaggatcttttatttcagctcatgaaacatgagaccaacactttacatattgcatttacatttttgtttagtgtagataaaaaattaaataaacagTAGCTGCAGATTAGCTATGAATGAGGTCAAGATTGGAACACAAGGCTGCAGGTTGTCATCATGACCACCTCAACCCCTCAGCCCTCAGTATGGGGGTACATTTGTAATGAGTACAGTAGAGAGATGCTAGCTACTACAGTAGCGAAATTCCAATATGAATCTACAGAAATGCACAGATTTCAAGTTTAAAAACAgctaatatatttatatagtataCACAGAACTTTTTATAGTCTCAAAGATGATAGTTTGTGGATATTTTGGAATTGATCTTCAGTGCATAAAAACCTGTTTGCATGCACACAAACCTTTTGGTtgtgtgaaattcatagattaaaGCTGGAAACTCCCATCCCTCAGACAGGTTGATAACCCTCTGACAGCTCTTAATATCAGAATACGGTGCAGCCGACACGGCCGTCAGTCATCTTTTGGGTCCTAACGAGTCTGAAAACACAGCCACTGATACAAGATCACAGCACACCAGTAATAGAGAAGGGTGGGAAAACAATACAGCGAAGGAACTTCAGGGACAAGCAAGATATGTACTTTACGTGAAAAGGGACAAGAACAAAGGCGGTAAAGGAGAAATCCTAGTTGAGTTTAAAGATATTGCACTTCTAATTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU779778 False 2553 lncRNA 0.41 3 21421794 21424438
TU779779 True 1580 lncRNA 0.40 2 21422922 21424539

Neighbor

gene id symbol gene type direction distance location
LOC110529589 LOC106571387 coding downstream 15723 21401943 ~ 21406071 (-)
LOC110529588 ngbr coding downstream 20684 21392338 ~ 21401110 (-)
LOC110529587 LOC106571386 coding downstream 36191 21247152 ~ 21385603 (-)
si:dkeyp-114g9.1 fbos coding downstream 180644 21231292 ~ 21241150 (-)
LOC110529586 NA coding downstream 224596 21187530 ~ 21197198 (-)
LOC110529592 LOC106571389 coding upstream 1080 21425619 ~ 21469294 (-)
LOC110529593 LOC106571390 coding upstream 74926 21499465 ~ 21504647 (-)
LOC110529205 LOC106571539 coding upstream 115343 21539882 ~ 21545761 (-)
trnal-cag-4 NA coding upstream 129519 21554058 ~ 21554140 (-)
afdna LOC106571391 coding upstream 134419 21558958 ~ 21688064 (-)
G684792 NA non-coding downstream 33745 21387816 ~ 21388049 (-)
G684791 NA non-coding downstream 34278 21387130 ~ 21387516 (-)
G684789 NA non-coding downstream 37508 21383918 ~ 21384286 (-)
G684690 NA non-coding downstream 129889 21287752 ~ 21291905 (-)
G684837 NA non-coding upstream 47076 21471615 ~ 21471826 (-)
G684863 NA non-coding upstream 66751 21491290 ~ 21491572 (-)
G684864 NA non-coding upstream 67170 21491709 ~ 21491926 (-)
G685004 NA non-coding upstream 95584 21520123 ~ 21520354 (-)
G685006 NA non-coding upstream 97206 21521745 ~ 21522034 (-)
G681659 NA other downstream 2629657 18791230 ~ 18792137 (-)
G679471 NA other downstream 4307266 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 4791535 16625090 ~ 16630259 (-)
G679087 NA other downstream 4988780 16432621 ~ 16433014 (-)
G676635 LOC106571254 other downstream 6905266 14508329 ~ 14516528 (-)
G684844 NA other upstream 54227 21478766 ~ 21479203 (-)
LOC110529207 sprtn other upstream 495888 21920427 ~ 21926307 (-)
G685953 NA other upstream 734491 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 2192368 23614938 ~ 23659111 (-)
G687890 NA other upstream 2210770 23635309 ~ 23637408 (-)

Expression


Co-expression Network