G684879 (LOC106571390)


Basic Information

Item Value
gene id G684879
gene name LOC106571390
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21501430 ~ 21501894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU779893
AGGCCGATGCTCTGGCTGATGTCTGCCCCTGCCCCGGTGAAGGTACCGGTCCAGGCCGAGCTGGTTGGCTCACTCTTCCCAATGTCACATGTTGAGGCGCTCGGCCCTTGGACAGTGGATGGAGGGAGCCGGTGCGGCCGGACGGAGGGCACCAGCAGAGAACTGTAGCGGGGGTCAAAGTGCGTGCCATACACCTCGTGCATGCTGGGTCGAGGGTAGGTGGAGCCCTGGGTGCCGATGGCCCCGCCAAGtgagtaggggtggtggtggtggtggtggtgtgagtggtgcCAGGGCTCTGGGGTAGCATGGTGGAGGTGACTATGTAGGGAGGCAGAGGAGTAAGGGTCCCCAGTGAAGGGTATCTCTGAGTGGGAGGCTCCTAAGGCACTGCTCATGGAGGAGGGCTGGTACGCACTGTTCCAGAAGGACGGAGGGAAACTCCTCTGGCTCATCGGGAATGGT

Function

NR:

description
transcription cofactor vestigial-like protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU779893 True 465 lncRNA 0.63 1 21501430 21501894

Neighbor

gene id symbol gene type direction distance location
LOC110529590 LOC106571388 coding upstream 78573 21406192 ~ 21424564 (+)
LOC110529585 LOC106571383 coding upstream 271320 21143069 ~ 21230110 (+)
mcm9 LOC106571380 coding upstream 364605 21117379 ~ 21136825 (+)
LOC110529583 LOC106571378 coding upstream 385133 21010321 ~ 21116297 (+)
LOC110529582 LOC106571376 coding upstream 509072 20825514 ~ 20992358 (+)
LOC110531076 LOC106571392 coding downstream 211266 21713160 ~ 21722182 (+)
LOC110529595 LOC106571393 coding downstream 270169 21772063 ~ 21774545 (+)
LOC110529596 LOC106571393 coding downstream 277976 21779870 ~ 21782714 (+)
LOC110529597 LOC106571394 coding downstream 287322 21789216 ~ 21816690 (+)
LOC110529600 LOC106571396 coding downstream 372505 21874399 ~ 21876744 (+)
G684878 NA non-coding upstream 480 21499512 ~ 21500950 (+)
G684860 NA non-coding upstream 11450 21489539 ~ 21489980 (+)
G684554 LOC106571387 non-coding upstream 97854 21402950 ~ 21403576 (+)
G684548 NA non-coding upstream 108526 21389871 ~ 21392904 (+)
G684881 NA non-coding downstream 2431 21504325 ~ 21504585 (+)
G684892 NA non-coding downstream 21909 21523803 ~ 21524079 (+)
G684896 NA non-coding downstream 28041 21529935 ~ 21530143 (+)
G684903 NA non-coding downstream 34984 21536878 ~ 21537160 (+)
G684904 NA non-coding downstream 36157 21538051 ~ 21538307 (+)
G684314 NA other upstream 422559 21077070 ~ 21078871 (+)
G683845 NA other upstream 794059 20707058 ~ 20707371 (+)
G683757 LOC106571373 other upstream 868531 20626950 ~ 20632899 (+)
G683669 NA other upstream 937996 20562875 ~ 20563434 (+)
G685215 NA other downstream 423223 21925117 ~ 21926356 (+)
G685311 NA other downstream 581980 22083874 ~ 22084224 (+)
LOC110529616 LOC106586086 other downstream 921164 22419790 ~ 22433035 (+)
G685469 NA other downstream 944877 22446771 ~ 22448073 (+)
G685551 NA other downstream 978429 22480323 ~ 22482139 (+)

Expression


Co-expression Network