G685740 (LOC106571393)


Basic Information

Item Value
gene id G685740
gene name LOC106571393
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21772241 ~ 21781290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU780864
GCGGACCGTGCAGTAGACCAACACAAAGAAAGGGATGAGAATCTGGGTGAAAAACACAACCTCTCTCAGAGTGTCAGTGACGTCCTCGACTAGAGTGTCATCTTCACGCCCATAACTATTACAGCACTCAAAGGACTTCAGCATGGTGGGGATAGTCAGGGGGAGCAGCAGTAGCCAGATGAGGATAGAGATATGAGGAGACCTTTTAAAAGCCTTGGCAAAGTTCTTTTTCCCAGGATGAACCACATTGAAATAGCGATCAACTGAAATCACAGTCAGGAAGGCGATACTGGCACCTCGGTTCAGAAACAGCATGAAGAGCATGGCTTTGCAGGTCCCTCCCTCTGTACTCCGCCGATTCCCATTAAGAAAATGATATGCCTTTACTGGCAAACATATAAGCAGAAGAACGTCAGCCAAGACGAGATTGAACAGGAAAATGTTGTTGGTTTTAGATTTCCAGAACTTCAGCTTGAAGATGAATAGATAAAGCACTGAGAGGTTGAGCGGCAGACCCAGGGTGAATTCCATGATCATCACAGAGGCGTAAAATTTGTACAGTGGCAGATTCTCTGCTGTGCAGTTATCACTTGGATGGCCGTTCTCCATTGTTTTCATCATCGAAAGCTTTCCTCTGTACAGTCAGACTCTGTCCGAATCCTTAATGAGAAAGACAAACAGTCCTCGAAAGTACTCAGCTCCTAATATTTCCTAACTTTACATGAAAATCAGGTCTGTTTGATGGTAGTCAAGCAAGGTCCTAGTCCGTATGCAGACTTGGTGAAACTGAAGGACTGCATTTCAGTCTGGAAGTAATTCCCCCCAGCACGCAGACAGCATAGCACTCAGTTCAGACTTGTCGGTTAAGCACCTCCCATGCCTGAGTAGACTAGTCACCAC

Function

NR:

description
12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU780864 True 900 lncRNA 0.46 2 21772241 21781290

Neighbor

gene id symbol gene type direction distance location
afdna LOC106571391 coding downstream 84177 21558958 ~ 21688064 (-)
trnal-cag-4 NA coding downstream 218101 21554058 ~ 21554140 (-)
LOC110529205 LOC106571539 coding downstream 226480 21539882 ~ 21545761 (-)
LOC110529593 LOC106571390 coding downstream 267594 21499465 ~ 21504647 (-)
LOC110529592 LOC106571389 coding downstream 302947 21425619 ~ 21469294 (-)
LOC110529598 s22a2 coding upstream 35422 21816712 ~ 21822446 (-)
LOC110529599 LOC106571395 coding upstream 51238 21832528 ~ 21872462 (-)
ttc13 LOC106571397 coding upstream 106683 21887973 ~ 21905043 (-)
LOC110529605 LOC106571399 coding upstream 134226 21915516 ~ 21918789 (-)
LOC110529207 sprtn coding upstream 140283 21920427 ~ 21926307 (-)
G685707 NA non-coding downstream 42891 21728885 ~ 21729350 (-)
G685706 NA non-coding downstream 43975 21727931 ~ 21728266 (-)
G685705 NA non-coding downstream 44442 21727488 ~ 21727799 (-)
G685696 NA non-coding downstream 50111 21715287 ~ 21722130 (-)
G685098 NA non-coding downstream 65131 21706908 ~ 21707110 (-)
G685776 NA non-coding upstream 105171 21886461 ~ 21886735 (-)
G685784 NA non-coding upstream 131674 21912964 ~ 21913189 (-)
G685762 exoc8 non-coding upstream 145757 21927047 ~ 21929631 (-)
G685868 NA non-coding upstream 266468 22047758 ~ 22048399 (-)
G685895 NA non-coding upstream 301622 22082912 ~ 22083121 (-)
G684844 NA other downstream 293038 21478766 ~ 21479203 (-)
G681659 NA other downstream 2980104 18791230 ~ 18792137 (-)
G679471 NA other downstream 4657713 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 5141982 16625090 ~ 16630259 (-)
G679087 NA other downstream 5339227 16432621 ~ 16433014 (-)
G685953 NA other upstream 377740 22159030 ~ 22161042 (-)
LOC110529643 LOC106571435 other upstream 1835617 23614938 ~ 23659111 (-)
G687890 NA other upstream 1854019 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1973542 23754832 ~ 23756910 (-)

Expression


Co-expression Network