G685953


Basic Information

Item Value
gene id G685953
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22159030 ~ 22161042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU781108
gacacacagacagacggacacacagatacagacacatacacagacagacaggcatgcagacagacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacacacacacagacagacagacagacagacagacacacagacagacagacagacagacagacagacacagacagacagacagacagacagactacttttttgccccactgtatacacagacagacacacacacagccagacacacacacagacggaaacacagacagacacgcacacaggcagacacacacacagacatatagacagaaatacacacacagacacacacacaaacagacagacagacagccatgcagacacagacggaaacacagacagacacgcacacagacagaaagacacacagacagacacacagacagacacacagacagatagaaagacatacacacacagacacacacacaaacagacagacagacagacagacacacagacagacacaaagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagaca
>TU781111
gacacacagacagacggacacacagatacagacacatacacagacagacaggcatgcagacagacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacacacacacagacagacagacagacagacagacacacagacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagactacttttttgccccactgtatacacagacagacacacacacagccagacacacacacagacggaaacacagacagacacgcacacaggcagacacacacacagacatatagacagaaatacacacacagacacacacacaaacagacagacagacagccatgcagacacagacggaaacacagacagacacgcacacagacagaaagacacacagacagacacacagacagacacacagacagatagaaagacatacacacacagacacacacacaaacagacagacagacagacagacacacagacagacacaaagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagaca
>TU781106
gacacacagacagacggacacacagatacagacacatacacagacagacaggcatgcagacagacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacacacacacagacagacagacagacagacagacacacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacatacagacagacagacagac
>TU781107
gacacacagacagacggacacacagatacagacacatacacagacagacaggcatgcagacagacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacacacacacagacagacagacagacagacagacacacagacagacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacatacagacagacagacagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU781108 False 607 lncRNA 0.49 2 22159030 22161042
TU781111 False 715 TUCP 0.49 2 22159030 22161042
TU781106 False 289 lncRNA 0.50 2 22160640 22161042
TU781107 True 301 lncRNA 0.50 2 22160640 22161042

Neighbor

gene id symbol gene type direction distance location
c8h1orf131 cssa15h1orf131 coding downstream 197923 21958205 ~ 21961107 (-)
LOC110529207 sprtn coding downstream 232723 21920427 ~ 21926307 (-)
LOC110529605 LOC106571399 coding downstream 240241 21915516 ~ 21918789 (-)
ttc13 LOC106571397 coding downstream 253987 21887973 ~ 21905043 (-)
LOC110529599 LOC106571395 coding downstream 286568 21832528 ~ 21872462 (-)
LOC110529612 LOC106571405 coding upstream 149339 22310381 ~ 22315605 (-)
LOC110529614 LOC106571407 coding upstream 248962 22410004 ~ 22416404 (-)
LOC110529617 LOC106571409 coding upstream 285673 22446715 ~ 22459584 (-)
LOC110529618 LOC106571410 coding upstream 320738 22481780 ~ 22496418 (-)
txlnba LOC100194672 coding upstream 372114 22533156 ~ 22562329 (-)
G685911 NA non-coding downstream 57136 22101641 ~ 22101894 (-)
G685903 NA non-coding downstream 69003 22089761 ~ 22090027 (-)
G685895 NA non-coding downstream 75909 22082912 ~ 22083121 (-)
G685868 NA non-coding downstream 110631 22047758 ~ 22048399 (-)
G685762 exoc8 non-coding downstream 229399 21927047 ~ 21929631 (-)
G685973 NA non-coding upstream 32493 22193535 ~ 22194183 (-)
G686073 NA non-coding upstream 192558 22353600 ~ 22354283 (-)
G686090 LOC106571406 non-coding upstream 221072 22382114 ~ 22393749 (-)
G686106 topk non-coding upstream 245223 22406265 ~ 22409834 (-)
G686138 NA non-coding upstream 338141 22499183 ~ 22499507 (-)
G684844 NA other downstream 679827 21478766 ~ 21479203 (-)
G681659 NA other downstream 3366893 18791230 ~ 18792137 (-)
G679471 NA other downstream 5044502 17113543 ~ 17114528 (-)
G679210 LOC106571290 other downstream 5528771 16625090 ~ 16630259 (-)
LOC110529643 LOC106571435 other upstream 1455865 23614938 ~ 23659111 (-)
G687890 NA other upstream 1474267 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 1593790 23754832 ~ 23756910 (-)
G688109 NA other upstream 1827057 23988099 ~ 23988854 (-)
G688366 NA other upstream 2264021 24425063 ~ 24425553 (-)

Expression


Co-expression Network