G686406


Basic Information

Item Value
gene id G686406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22839556 ~ 22910729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU781615
tacttctccacaactttgtccctgacctgttgggagagctccttggtcttcaaggtgccgcttgcttagtggtgttgcagactctggggcctttcagaacaggtgtgtgtgtgtgatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacgataagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaagctgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagtttagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcaccagcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtattagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggaccatga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU781615 True 752 lncRNA 0.43 2 22839556 22910729

Neighbor

gene id symbol gene type direction distance location
gje1 LOC106571413 coding upstream 30007 22804904 ~ 22809549 (+)
LOC110529619 hdc coding upstream 327527 22506844 ~ 22512029 (+)
LOC110531077 NA coding upstream 333194 22503872 ~ 22506362 (+)
LOC118965502 NA coding upstream 341284 22496445 ~ 22498272 (+)
LOC100136120 LOC100136120 coding upstream 361000 22473965 ~ 22478556 (+)
aig1 LOC106571419 coding downstream 165655 23076384 ~ 23144537 (+)
pex3 pex3 coding downstream 240552 23151281 ~ 23155668 (+)
atf3 atf3 coding downstream 266909 23177638 ~ 23181382 (+)
tatdn3 tatdn3 coding downstream 291515 23202244 ~ 23208093 (+)
flvcr1 flvcr1 coding downstream 298499 23209228 ~ 23220811 (+)
G686378 NA non-coding upstream 39871 22798189 ~ 22799685 (+)
G686334 NA non-coding upstream 96500 22742855 ~ 22743056 (+)
G686308 NA non-coding upstream 116541 22722734 ~ 22723015 (+)
G686298 NA non-coding upstream 124692 22714520 ~ 22714864 (+)
G686296 NA non-coding upstream 125768 22713526 ~ 22713788 (+)
adgrg6 LOC106571415 non-coding downstream 3624 22860014 ~ 22915654 (+)
G686432 NA non-coding downstream 12551 22923280 ~ 22923520 (+)
G686438 NA non-coding downstream 20024 22930753 ~ 22931260 (+)
G686444 NA non-coding downstream 26443 22937172 ~ 22937372 (+)
G686446 NA non-coding downstream 29521 22940250 ~ 22940510 (+)
G685551 NA other upstream 357417 22480323 ~ 22482139 (+)
G685469 NA other upstream 391483 22446771 ~ 22448073 (+)
LOC110529616 LOC106586086 other upstream 406521 22419790 ~ 22433035 (+)
G685311 NA other upstream 755332 22083874 ~ 22084224 (+)
G685215 NA other upstream 913200 21925117 ~ 21926356 (+)
G686448 LOC106571417 other downstream 35772 22946501 ~ 22972836 (+)
LOC110529640 LOC106571431 other downstream 573703 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1073716 23961761 ~ 23991295 (+)
G688613 NA other downstream 2072000 24982729 ~ 24984826 (+)
G688823 NA other downstream 2148224 25058953 ~ 25061450 (+)

Expression


Co-expression Network