G686858


Basic Information

Item Value
gene id G686858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22855889 ~ 22858714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU782137
TTTCTGTAACTCTTAAGGCAATAGGCAGGCATTGAAGATAAGACAATGAGCGCAATGACATCAAGAATCTAGGCATGATAATCACTTTGAACAGGTTGAGCAAAACAAAACGTGACCCGGGCGACTAATTGATTATTTCCTTAATAAGTAAAGGGCTTGGGACACTCAAATGGAGTGGAACACAGAAACCGGATTAATTTACTAAACATAAATGGGGTTAAACAGTAAATATGTGGTATTTTGGAAATGCACGACTCAAAAATGTCAGTCAGCAATCATGTAGTTCATTACAGGTTTACTTTCTATGCCTCTTGAAATTACATTATAAATATTAGAAGTTCTTGTTCACACCTTTAATCTAATTTTCTCAAATTGCACATTCAAGCGTTCCTTTTAATGTGCCCGCAGAGTGAATATTCCACTATGAGGTCCACTCAATTATCTGCTCTTAAGAGTTTCAGCACAATTTAATAATGGTTGATGGCTATAAATTAGTTAAATTACCATTATCCAAGGAGCAGTAAGAGACATTAGGGGATAATGACTTGGAGAAGGTCATTTTCAGAGCTTAGTTACATAAACAGAGCAAATTagttaaatatactgaacaaaaatataaatgcaatgtGTAAAGTGTTATTCTcatgtttcattagctgaaataaaagatcccagacattttacatacataaaaagcttatttctctcaaattttgtgcacacatttgttttcatccctgttagagaacatttgtcctttgccaaaacaatccatccaccagacaggtgtggcatatcaagaagccgattaaacagcatgttcattacacaggtgcaccttgggctgggggacaataaaaggccactctaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcaagttaagGGAGCAAGCAACTCGCAtgccgactgcaggaatgtccaccagagctgttgccagataatttcatgttaatttctctaccataagccacctttaaactcattttagagaatttggcagtatgttcaacctgcctcacaaccgcagaccacgtgtaaccacgccagcccaggacctccacaaacGGCTTCTTCACCTACTGGATCGTCGGTGAGAAGCCACCCGGACAGTTGATGAAACaggaatatttctgtctgtaataaaacccttttgtggggggaaaactcattcggattggctgggcctggctcccaagtgggccctcccaggcccacccatggctttgcccctgcacagtcatgtgaaatccatagattagggcctaattcatttatttcaattgactgatttccttgtatgaactgtaactcagtaacattttttaaatagtttCATGTTTcgtctatatttttgttcagcacaCATTTGAAGTGGAGACAGCAATCGCACGTTCTGGATATATTTATTCAAATAACCCATCAACTGGGACTGTTGCTGTCTCTACGGTGGAGCACTGGCATGCTTAATTACTTTCCAATTCAAAATCCTTAtggaaatgtattaaataatgaACAATGACCTAAACACTTCAATTGATTTGTTTTAATAATGGTCAAATGAGTCCTTAATTTACATTAAGTACACATTGActagaaaatgtaaaaaacaaaacaagggAGTTTAAATGAAAAATTAAAGAAATCAGAAACATAAAACACACTAAGGAACTTTTGCATATTTGAGGATGGACTGATCAACTGCTCAGTCAAAGTTGACTACATACAAAATTACAAGTTTAGTGTTAAAGTAAGGGAAGCGCTTTCAACTATAGTGACATTACCGTACCCTTGGAATTAGTTCTCTATGAggcggtttcctggacacagattaagcttaatctacGTCTGGGGAAACTGGCCCCAAATGTCCCCTCTCTGACTGCGCCCTCCCCAAGAAGCCATCACACAAAGTAAACATGAACAAGTCTTCCTCTTGCTTGGACAGTTTTGTTTGTACAGCTCTGTGTACTAAAGCAGACAGCATCAGTACAAACAGAGCACCAAGCATTAATAAATcactttaaaacatttatttaaattgtgtTGATGCAGAAAGGACAGTCTTTCACCAAAGAAAAGGAGATAAATAGATACTGATTTGAAAACACAGTAAAGGGCAGATCAATAATGTCCCCTGATAATAATCTTTTGAAGCATTGGCCTATAAATTAAGTTTAACGAGAGAAACTGTGTAGTCTTAAAGTATTATGAACTGCAAACGCTGAGCATGTCCCCAAAACATACATGCATAAGGAGGGGATGTGTGTTATCAAAACAGTCAGTTAGTTGCTAGTGGAAACTAATAAGGTGGATACTGTGCTAATAGAGGAAGGATGCACCGTTTTAATATACAGGCTCAGGAAGTCTTTATTGAGCGCTTCACTCTAGTCATGGACAGCCATGTTGGAAGCTACACAACAGGAGTCCAATATGGAGACACAGATGTCATTGTTGTTTACAGTGATGTTGAAGGCTTGGGACAGAATTGCTCTCTTCAGACGCATGCCGTAGACTAGAGGCTAATGGTCTCTTCTGGACCAGATCAGCAATACAGTGACACCCAGGGACAATGGGTCTCATTCTTTTCCAGTGGTCAGTAAGTTGAGGGCCTTCTGCAGATTTTGCACCGCCGTGCCCACGTCTTCATACTGCAGGGCGCTGCCAGCGTACTTGCAGTACTTCTGAGCCCTGGTGTAGTCCTCTGGCGTGAGGCGCAC

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU782137 True 2755 lncRNA 0.40 2 22855889 22858714

Neighbor

gene id symbol gene type direction distance location
nmbr LOC106571412 coding downstream 52228 22789862 ~ 22803661 (-)
cited2 LOC106571411 coding downstream 278377 22575120 ~ 22577512 (-)
txlnba LOC100194672 coding downstream 293560 22533156 ~ 22562329 (-)
LOC110529618 LOC106571410 coding downstream 359471 22481780 ~ 22496418 (-)
LOC110529617 LOC106571409 coding downstream 396305 22446715 ~ 22459584 (-)
si:ch211-202p1.5 LOC106571542 coding upstream 70977 22929691 ~ 22950071 (-)
hivep2a LOC106571417 coding upstream 111375 22970089 ~ 23066952 (-)
adat2 adat2 coding upstream 287744 23146458 ~ 23151249 (-)
batf3 LOC106571544 coding upstream 333850 23192564 ~ 23198250 (-)
nsl1 nsl1 coding upstream 340797 23199511 ~ 23202233 (-)
G686314 NA non-coding downstream 128651 22726933 ~ 22727238 (-)
G686297 NA non-coding downstream 141985 22713635 ~ 22713904 (-)
G686295 NA non-coding downstream 142413 22713167 ~ 22713476 (-)
G686293 NA non-coding downstream 143865 22711758 ~ 22712024 (-)
G686277 NA non-coding downstream 156509 22699162 ~ 22699380 (-)
G686891 LOC106607820 non-coding upstream 45708 22904422 ~ 22904940 (-)
G686899 NA non-coding upstream 54577 22913291 ~ 22915850 (-)
G686912 NA non-coding upstream 80756 22939470 ~ 22939761 (-)
G686913 NA non-coding upstream 81316 22940030 ~ 22940483 (-)
G685953 NA other downstream 694847 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 930981 21920427 ~ 21926307 (-)
G684844 NA other downstream 1376686 21478766 ~ 21479203 (-)
G681659 NA other downstream 4063752 18791230 ~ 18792137 (-)
G679471 NA other downstream 5741361 17113543 ~ 17114528 (-)
LOC110529643 LOC106571435 other upstream 758193 23614938 ~ 23659111 (-)
G687890 NA other upstream 776595 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 896118 23754832 ~ 23756910 (-)
G688109 NA other upstream 1129385 23988099 ~ 23988854 (-)
G688366 NA other upstream 1566349 24425063 ~ 24425553 (-)

Expression


Co-expression Network