G686448 (LOC106571417)


Basic Information

Item Value
gene id G686448
gene name LOC106571417
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22946501 ~ 22972836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU781664
tatttgtattttttcttatttttctttatGGGATGCGCACTGCAGAAAACACCGGAAGGCTAATTATCACCGTGAATTATTGTActgcttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtttaaatgtctgtctctctgtgtgcgcgtcgtgtgtgtgtgtgcaattgtACGGGTTGATGTCTTTGCGTTGCACGTCCTTCCCTTTTTAACAATGTTCACCTGTTCTCGGTGGCATCCTTTAATATATTTTTGCCTCTCTTTGTGCTTTCTGGTCTTTCCCCAGGGCTTTGTTGACCTGGCGACCTCTCCTTGGCACAGTGGCCTGGGCCTGCCGTGGAACCCGCCGGGCCCTTTGATGTGGCTGGCAGGGAGGTCTCCGAGCTGGAGCTGGAgtgtagggggagaggggaggcagagtgGCCGTCCGGGGACTGCCTAACCTCTAGGCCACTAAAGTGCTGAATGATGCTGGAGCTTCTCTCCTGAGGGCTGGggtaaggggagtgagaggaGTGAGGCAGTGGGGAGGGGTGTCTCTGATGGGCGTCTGAAGAGCACACCAACATGCCCTTCTCCAGAGTGTCGTGTTCTGTAGCGATGCGGAGCGAGGCGATAGCATTGGTACAAGTCTGTATGCTTTCCTCCTGCTGCTTAATGTCCTTGCTGTCTGACATGTCTGCGCTGTCCTGGCGACTTCCTGACCAGGGTAAGGACGGGCCAGGGGAGGGGACCGGCGTCCCCCGAGAGGAAAAGGATGATGACACCATCCTCTCCTGGCGCTGGGGTGAGTCGGACGACCCGGTGGAACCCctggaccctcctcctccctcgACCAGGTGGAAGGAGACCTCGCTGGTGCTGGACTCCTCGGACGTGCTCTTCTGCAGGGGGAGGCGGGCGGGATGGGTCaggccggtgactgaggtgggcACGGAGTGCACCATCTGGATGCCGCCGATGGGGATCATGGGGAAGGAGGTGCGGACCTGTTGCTGGGAGTGCAGAGGGAGGTGGCTGAACAGGCCCTGGTGGGGCAGAGGGGACTCCTGGCTGCTGTGGGGAGG
>TU781666
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcatgcgtctgtgtatgtgtgtgtgtgtatacaaatTCATGGGCATTCAATATTTACATCAGCTGGAATGTTCCCCATACTAATCAATAAATCAAGTACTTCAAGCAACGTGATTCACAGAAGATCAAACTATCTTTAATATTTCACTACTACTTCAGTAAGCGTTGAatgaaaacaaaaaataaaagcacATTGATTCACTTAATGCTGAACAGTTCTACtttttgtaaaaaatgtaaaatcacAACTAGTGTAGCCAATCCAGCGAACAGGAGAGAAAAAGGTCCAAGCATTTAGAACTAACTACCATACTGTATGTGGGTGTCAATCTAAAACCTAAgtgcacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatactatatatatatatatttatatactagATATATATTCTGGTAAATtgtatcatatgtatatacctcCAAGTAAAGTGCATTCACTTAGGTGTATATAAATACTTCTAACATATAAAGCCATTTTACAGTGTACATATTGTTTGCTCTAATTATGCCATAGCAAAACCCATGCTTTACATAGAAAAGGCATCCACAACATTaagaaaaatgtacattttatgaAACATGATACAATAAATAGTATTATAGAATTGCTGCTGTACACAAAAGCCATTTCATTTCACTCatataaaaatatgttttagtgCAACCTTACATATATTGATACTTCACATCATTCAGACTCAAGTGTCTAAAAAAGACGAGAAATTGCATTTATTACAAAGCTGATACACAAACGTGATATATTAACATATCTTCCTGCTTAATATGCTTATAAGAATATAAGCAACAAGTAAAGAAAAGGCACACACATCTGTACATTTAAAAGTACCAGACTGGAGTCCATCATCAATTTGGTCAGGCTCATATATAagttaacatactgtatgtatattctCTGAAAATTTAAATAAGAAAGAAATTGTTAAAATAGCAAACCAGGTTATAAAAGGCATGCTATACATTTAAACTACAGAGTATCTACTTAATTTGCTTGTTTAAagacttgtttgtgtgtgtgtgtgtgtgtttaaatgtctgtctctctgtgtgcgcgtcgtgtgtgtgtgtgcaattgtACGGGTTGATGTCTTTGCGTTGCACGTCCTTCCCTTTTTAACAATGTTCACCTGTTCTCGGTGGCATCCTTTAATATATTTTTGCCTCTCTTTGTGCTTTCTGGTCTTTCCCCAGGGCTTTGTTGACCTGGCGACCTCTCCTTGGCACAGTGGCCTGGGCCTGCCGTGGAACCCGCCGGGCCCTTTGATGTGGCTGGCAGGGAGGTCTCCGAGCTGGAGCTGGAgtgtagggggagaggggaggcagagtgGCCGTCCGGGGACTGCCTAACCTCTAGGCCACTAAAGTGCTGAATGATGCTGGAGCTTCTCTCCTGAGGGCTGGggtaaggggagtgagaggaGTGAGGCAGTGGGGAGGGGTGTCTCTGATGGGCGTCTGAAGAGCACACCAACATGCCCTTCTCCAGAGTGTCGTGTTCTGTAGCGATGCGGAGCGAGGCGATAGCATTGGTACAAGTCTGTATGCTTTCCTCCTGCTGCTTAATGTCCTTGCTGTCTGACATGTCTGCGCTGTCCTGGCGACTTCCTGACCAGGGTAAGGACGGGCCAGGGGAGGGGACCGGCGTCCCCCGAGAGGAAAAGGATGATGACACCATCCTCTCCTGGCGCTGGGGTGAGTCGGACGACCCGGTGGAACCCctggaccctcctcctccctcgACCAGGTGGAAGGAGACCTCGCTGGTGCTGGACTCCTCGGACGTGCTCTTCTGCAGGGGGAGGCGGGCGGGATGGGTCaggccggtgactgaggtgggcACGGAGTGCACCATCTGGATGCCGCCGATGGGGATCATGGGGAAGGAGGTGCGGACCTGTTGCTGGGAGTGCAGAGGGAGGTGGCTGAACAGGCCCTGGTGGGGCAGAGGGGACTCCTGGCTGCTGTGGGGAGG
>TU781670
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcatgcgtctgtgtatgtgtgtgtgtgtatacaaatTCATGGGCATTCAATATTTACATCAGCTGGAATGTTCCCCATACTAATCAATAAATCAAGTACTTCAAGCAACGTGATTCACAGAAGATCAAACTATCTTTAATATTTCACTACTACTTCAGTAAGCGTTGAatgaaaacaaaaaataaaagcacATTGATTCACTTAATGCTGAACAGTTCTACtttttgtaaaaaatgtaaaatcacAACTAGTGTAGCCAATCCAGCGAACAGGAGAGAAAAAGGTCCAAGCATTTAGAACTAACTACCATACTGTATGTGGGTGTCAATCTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU781664 False 1065 TUCP 0.58 2 22946501 22972836
TU781666 False 2190 TUCP 0.44 2 22950182 22972836
TU781670 True 442 lncRNA 0.39 2 22950182 22971122

Neighbor

gene id symbol gene type direction distance location
adgrg6 LOC106571415 coding upstream 34528 22860014 ~ 22915654 (+)
vta1 LOC106571414 coding upstream 92893 22809882 ~ 22857289 (+)
gje1 LOC106571413 coding upstream 140633 22804904 ~ 22809549 (+)
LOC110529619 hdc coding upstream 438153 22506844 ~ 22512029 (+)
LOC110531077 NA coding upstream 443820 22503872 ~ 22506362 (+)
aig1 LOC106571419 coding downstream 105262 23076384 ~ 23144537 (+)
pex3 pex3 coding downstream 180159 23151281 ~ 23155668 (+)
atf3 atf3 coding downstream 206516 23177638 ~ 23181382 (+)
tatdn3 tatdn3 coding downstream 231122 23202244 ~ 23208093 (+)
flvcr1 flvcr1 coding downstream 238106 23209228 ~ 23220811 (+)
G686447 NA non-coding upstream 6728 22943126 ~ 22943454 (+)
G686446 NA non-coding upstream 9672 22940250 ~ 22940510 (+)
G686444 NA non-coding upstream 12810 22937172 ~ 22937372 (+)
G686438 NA non-coding upstream 18922 22930753 ~ 22931260 (+)
G686432 NA non-coding upstream 26662 22923280 ~ 22923520 (+)
G686555 NA non-coding downstream 175368 23146490 ~ 23147721 (+)
G686556 NA non-coding downstream 188784 23159906 ~ 23160262 (+)
G686557 NA non-coding downstream 190191 23161313 ~ 23161518 (+)
G686558 NA non-coding downstream 190442 23161564 ~ 23162164 (+)
G686560 NA non-coding downstream 194964 23166086 ~ 23167648 (+)
G685551 NA other upstream 468043 22480323 ~ 22482139 (+)
G685469 NA other upstream 502109 22446771 ~ 22448073 (+)
LOC110529616 LOC106586086 other upstream 517147 22419790 ~ 22433035 (+)
G685311 NA other upstream 865958 22083874 ~ 22084224 (+)
G685215 NA other upstream 1023826 21925117 ~ 21926356 (+)
LOC110529640 LOC106571431 other downstream 513310 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 1013323 23961761 ~ 23991295 (+)
G688613 NA other downstream 2011607 24982729 ~ 24984826 (+)
G688823 NA other downstream 2087831 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 2707530 25678604 ~ 25685894 (+)

Expression


Co-expression Network