G686560


Basic Information

Item Value
gene id G686560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23166086 ~ 23167648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU781791
attctgtatgtacatagggcagcagtctgtAAGgcgcagggtagagtaccgggtggtagccggctagtaacggtgactaagttcagggcagggtactgggcagtggtgactatttaacagactgatggcctttcagtctctcagtcccagctttgatgtacctgtactgtttCCGCCTTTGAGATGGTttcagggtgaacaggccgtggctcggatggctcaggtccttgatgatcttggccttcctgtgacactgggtgctgtagatctcctggagggcaggcagtgtgcccccggtgatgcattgggctgaccgcaccaaCCTTTGGAGAGTCCTGTGGTTGCGGACGGTGCAactgccataccaggtggtgatacagcccgacaggatgctctcaatggtgcatctgtagaagtttgtgagggtcttaaggGCCAAACTGAATTCCttcagcctcctgtggttgaAGAGGTCCTGTTGCGTCTTCTACACCACATTGTGTGGATGGTCTATTTCAGGTTGTCAATGATTTGCACGCCGAGCAACTTTAagcttttcaccctctccactgtggctccgtcaatgtggatgggggcgtgctctctcttctgtctcttgaAGTCGATGGTCAGGTCCTTCATTTTTTggacgttgagggagaagttataTTCCTGGCAcgactccgccagggccctcacctcctccctgtaggctgcctcatcgttgttggtaatcaagcctcccactgtagtgtcatctgcaaacttgatgattgagttggagacgtgcgtggccatgcagtcatgggtgaacagggagtacaagagagggctgagcctgcacccttgtggggcccccgtattgaggatcagcgtaacggacgtgttgttgcctaccttcaccacctggggtcggtcCGTTAGGAAGTCCAGAACCCAATTTCACAGGGAGGGgtccagacccagggccctgagcttagtggTGAGCTCGGACGgtgatggtgatgaaggctgagctgtagtcgatgaccAGAAtacttacataggtattcctcttctccagatgggatagggcagtgtgcagtgcgatggcgaatGTGTaatccgtggatctgttggagcggtatgcaaattgtagtggatCTAGGGTatcgggtaaggtggaggtgatatgatccttatcTAGCCATGATGACAGAAATGAGTACTATGGGGCGATGTTCATTTTCTTCAGTtgccttcgctttcttgggtacaggaaaaatggacagcagactgggataggaagagataggaggggaggagcagaatagaggcgtgatctgatttgccaaaggggaGTAGCAATGGTCAAGAGTACTCGATGAGCGTGTAGCGAAGGAGATTTGTTGATAAACTTCAGTAGCATTTTCCTCCAATTTGCTTTATTAAATTCCCCAGCTACAATacatgcggcctcaggatatgcggtttccagtttgcacacaGTCCACTGTAGTTCCTTGAAAGCCGTGGAGGtgtcggcttgagggggaatacaCATGGCCATGATGATGACCGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU781791 True 1563 lncRNA 0.52 1 23166086 23167648

Neighbor

gene id symbol gene type direction distance location
pex3 pex3 coding upstream 10418 23151281 ~ 23155668 (+)
aig1 LOC106571419 coding upstream 21549 23076384 ~ 23144537 (+)
adgrg6 LOC106571415 coding upstream 250432 22860014 ~ 22915654 (+)
vta1 LOC106571414 coding upstream 308797 22809882 ~ 22857289 (+)
gje1 LOC106571413 coding upstream 356537 22804904 ~ 22809549 (+)
atf3 atf3 coding downstream 9990 23177638 ~ 23181382 (+)
tatdn3 tatdn3 coding downstream 34596 23202244 ~ 23208093 (+)
flvcr1 flvcr1 coding downstream 41580 23209228 ~ 23220811 (+)
vash2 vash2 coding downstream 53881 23221529 ~ 23249786 (+)
LOC110529639 LOC106571429 coding downstream 200661 23368309 ~ 23405523 (+)
G686558 NA non-coding upstream 3922 23161564 ~ 23162164 (+)
G686557 NA non-coding upstream 4568 23161313 ~ 23161518 (+)
G686556 NA non-coding upstream 5824 23159906 ~ 23160262 (+)
G686555 NA non-coding upstream 18365 23146490 ~ 23147721 (+)
G686448 LOC106571417 non-coding upstream 194964 22946501 ~ 22972836 (+)
G686568 NA non-coding downstream 22267 23189915 ~ 23190117 (+)
G686569 NA non-coding downstream 23159 23190807 ~ 23191047 (+)
G686602 NA non-coding downstream 84561 23252209 ~ 23254320 (+)
G686675 NA non-coding downstream 188915 23356563 ~ 23420985 (+)
G685551 NA other upstream 683947 22480323 ~ 22482139 (+)
G685469 NA other upstream 718013 22446771 ~ 22448073 (+)
LOC110529616 LOC106586086 other upstream 733051 22419790 ~ 22433035 (+)
G685311 NA other upstream 1081862 22083874 ~ 22084224 (+)
LOC110529640 LOC106571431 other downstream 316784 23484408 ~ 23524035 (+)
LOC110529210 ift172 other downstream 816797 23961761 ~ 23991295 (+)
G688613 NA other downstream 1815081 24982729 ~ 24984826 (+)
G688823 NA other downstream 1891305 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 2511004 25678604 ~ 25685894 (+)

Expression


Co-expression Network