G687075


Basic Information

Item Value
gene id G687075
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23245556 ~ 23249740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU782390
AAAACCATTGTCAACTGATCAGTGTAACAGTAGGAGTTGGGAGGACATTATCTTCCACCAGCggtcaaaatacaaaaatcaccCTGTCATCATCATACATGGAGAAAACCAGGGGCGGATTCTAAAGTCTCATTTCAATAGAATAGTGGTGCTGTAAGAAATGCTACCATTTGTTCTGCTATTGATCTTCCATCAGTACTTTTCCTTTTCAGCCAATGGGACAAATAGATCAGCCCTTTCCAGAAAGATATGAGAATAATACCAGCCAACTGGCAGCACCAGTGGCATGAGTATAAAAAAGAACACTCTTAACACCCAGAGTCCTAGTACATTCCCATTTACGAGAAGAGGCCAAGAGTCCTAGTACACTCCCATTTACGAGAAGAGGCCAAGAGAACACTCCTCATGAAACGTACCTTAATACAGGAAAAGCAGTCTCATCTAAAACGCTGAATTGCAGTGACTCAAAGGTAGAGTTCCACAGTCCACATCATGCTTTGAAAACACCTAAATATTCAGTAACACTTAGTCCCAACAGCACATCATTGCCTTTCAAGTTATCAACCACTAAATGCAGAAGGTGGTGGTATATTATAGTGGTGGTAGCTGGTTTAGGTTACTCATATTGTGCAGTTATTCAGATAacttgtttttcttttctttttttttttaaaacaccatTTGGTAAATACAAAATGGATAAAAGAAATCCACAGTCATGAGTGGTACTGTTTTTCTTTAACCATTATCCCATTGGATGGTACTTCATTTTTCAAGCCTATTCAGTGGTCAAACAGTACAAACATAGCAAGACCTTTGAAAAATGATACTGCTACAATGTGGTGTGCTTCTTTAAAAATCACACCTCGTCCAAagaatatcatcatcatcatcatcatcatcatcacaacaaaGTGTTTTCACCACGTCATAAAAACAACAACCAGCACGATTAAACACTGCACTCAGTAACAGATTTGTTCAAGAAACAGCGAATAATCACCAATAGAACTCAGCCACAACACAATTTAGCTCAACACTAAACAGTTAAGAGCACAACTCTAATTTAGCTACATCACTTAAGAGTATTATCTTTCAGTTCCCAGATTTGCAGCAGTGAAAGCAGTCTTTCCTCCCAGTAAGGGTTCTAATCAATCTGGAAAGCTGAAGAGTTAGATATGCAGTGGGTATGGTAAATGCAGTCTCCACTAAAGCTGACATTGCCTTCAAATTTCAGTCacgctgtaaagctgaacttccgcaatgcatattGAAAAGAGTGTTTAACAGTAAGTGTTTAACAGTAAGAATGTTAAACCTAGCCTGTATAGATTTGACAAACAATTGTATTGTGTAAAAGTGAAGCACATTCTGCTTCTATAGAGGATTGTAAAACCAAAgtcatacactacatggccaaaagtatgtggacacctgctcgtcatcTCATTCCGAAATCACGGCGATTACTatgaagttggtccccctttgttgctataacagcctccactcttctgggaacgcTTTCCgtcagatgttggaacattgctgtggggacttgcttccattcagccacaagagcattagtgaggtcggcactgatgttgggcgattaggcctggctcgcagtcggcgttccaattcatccacaaggtgtttgatggggttgaggtcagggctctgtgtaggccagttacgttcttccacaccgacaatccatttctgtatggacctcgctttgtgctttgccatgctgaaacaggaaaggggcttccccaaactgttgccacaaagttggaagcacagaatcgtctagaatgtcattgtatactgtatgccttttccagagtcagtttggaactcggtagtgagtgttgcaaccgaggacagacggttTTCacgtgctacgcgcttcagcacatttccacttcccaataacagcacttacagttgaccggggcagcactAGCACGGCAGAAATTTGATAAActgtcttgttggaaaggtggcatcctatgacagtgccacattgaagtcactgagctcttcagtattggtcattctactgccaatgtttgtctatggagattgcttggccgtgtgctcgattttatacacctgtcagcaacgggtgtgactgaaacAGCCGAATTCACCAATAcatatacttttggccatgtataTTAAGCTGGTTATTTTGTGCTTATAGTCTTTCAGACGGCTGGTGCCAATAGTGTTGGCCTTGATGGTATACTGTCAGACTAGCAGCACCATTCACAATTTGATCGTtagaataaaacattttaattagAAACATAAGAACTGATATGTTCTCAGCTCGTTCAGGATTCAAGAAAATGAGACTGGATTTCAATTCTGCTGCAATCTCGAAACTATTTAGATTGAGGAAGACATACAATGATTTATCATTTCCCTTTGATGTGCATAGCTTGTTTAACCAAAAGCTATAAAATGTTATATTGTTCAGTTGGCACCCTCCTGGATATCTGATGACTTTTGAATACTacaaaaaaaaatggaaacaATCTTCAACACCGCATCATGGCAGTTGAGATGGCATAGAAGCCTTGATTTGACTGATGTGTCTGTCTTGTGGTGTTCAGTTCAGTATTTGCATTCTTAACTTCAAGATTCTGTGATAGGATTCAGAAAGGCCTCAGGTTAGGAGCTACATAATATTATCAGACATGTTTTCGTATACGTCTGTATGCTGAGGTGTAACAGAGTTGACATTTTGAAGCAACACGTCACGGTCAAATTCTCTTGGGATTAAAAAGGTAATGTTCTGGCTAAGCTCCAAAGCATCATTGTCACAAGCTTTGATTTCCTTAAAAGATTAATTGATCTGGgcctgAGGAGGgtctatagagacagagacaggggggaTAATCTAACCGAGAGTCAGTGTCAGGGCTGGGGTTTAGCAGAGTACTCAGCAGGCTCTCTGCTTGACTGCCCTGGTCTTTGgcccctctctgttcccctcaCCTAAAGCCTACAGTACCTCCTGTTTCCTCCAACTCTTCTCTCACCCTTTCACTTCCCACATCATCACACGGACTACAGCTCAGCCCAGCAGATAACTACTTAACATCCTCTACAGGCTTAGGCATTACAACAACCGTTCAGTCTATATATTAAttatattgaaaaaaaaaatagatgaTCAGTCACACTATTTGATCCTTTTTACATAATGTCAACATACTGTCGGCTATTTTTTTAACCCACAGATTCTGTTTTTAAAAACGAATCTTCACATTGTAGAAGTAAACGAAATGTGACTGTTGCTCTCCTACACAAAAGCACACAGGCTATACAAAAACTGATTTTTTTAAAAACGATGTAGAGAATCCAACATATGTACTTCTCTAAACGCATGAGAGGTCTTGATATGATGTCTTCATGCAATTTAGGCATCAGTCCTTCATTAAAAACATAATAGATATGTATGCAAATGTATAATGTGGCTAATGCATGTGTGGAGGTGTATAATGAAACACACCTCTTGTTCAGGCTTTTGTTCGTCTGGTCATGAAGGACAGGAAATATATACCTTTGATATATTCAATGTATTTGTTCCTACTGGATGTCAGCCTCCAGTTTAGCACTGAGCATAATGTCATCATCTTCCCCCTATAGAAGAGGCTGGCAAAACCCTATAAATACTTTAGAATTATGATATACACAATGTCAGGTGAACATATGTGAGGGAGGCGGACTGGGTGGTCAGAGTGGAGACCAGGAGAATGTAGTCCAGTTCCAAGGAGTCTCAGATGCGGATCTGGTAGCCGTCGGTCAAAGTGCTGAGTTCTGCAGGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU782390 True 3844 lncRNA 0.41 4 23245556 23249740

Neighbor

gene id symbol gene type direction distance location
nsl1 nsl1 coding downstream 43323 23199511 ~ 23202233 (-)
batf3 LOC106571544 coding downstream 47306 23192564 ~ 23198250 (-)
adat2 adat2 coding downstream 94307 23146458 ~ 23151249 (-)
hivep2a LOC106571417 coding downstream 178604 22970089 ~ 23066952 (-)
si:ch211-202p1.5 LOC106571542 coding downstream 295485 22929691 ~ 22950071 (-)
angel2 angel2 coding upstream 3847 23253587 ~ 23259122 (-)
galnt14 LOC106571428 coding upstream 10448 23260188 ~ 23365791 (-)
LOC110529641 LOC106571433 coding upstream 277890 23527630 ~ 23582982 (-)
LOC110529643 LOC106571435 coding upstream 365198 23614938 ~ 23659111 (-)
LOC110529644 NA coding upstream 429091 23678831 ~ 23682862 (-)
G687024 NA non-coding downstream 36741 23207872 ~ 23208815 (-)
G687044 NA non-coding downstream 56338 23189015 ~ 23189218 (-)
G687041 NA non-coding downstream 59165 23186158 ~ 23186391 (-)
G687034 NA non-coding downstream 71240 23173971 ~ 23174316 (-)
G687031 NA non-coding downstream 80431 23164770 ~ 23165125 (-)
G687029 NA non-coding upstream 26080 23275820 ~ 23277349 (-)
G687121 NA non-coding upstream 97461 23347201 ~ 23347874 (-)
G687137 NA non-coding upstream 118614 23368354 ~ 23369103 (-)
G687135 LOC106571429 non-coding upstream 153561 23403301 ~ 23405523 (-)
G687155 NA non-coding upstream 171926 23421666 ~ 23422179 (-)
G685953 NA other downstream 1084514 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1320648 21920427 ~ 21926307 (-)
G684844 NA other downstream 1766353 21478766 ~ 21479203 (-)
G681659 NA other downstream 4453419 18791230 ~ 18792137 (-)
G679471 NA other downstream 6131028 17113543 ~ 17114528 (-)
G687890 NA other upstream 385569 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 505092 23754832 ~ 23756910 (-)
G688109 NA other upstream 738359 23988099 ~ 23988854 (-)
G688366 NA other upstream 1175323 24425063 ~ 24425553 (-)

Expression


Co-expression Network