G687135 (LOC106571429)


Basic Information

Item Value
gene id G687135
gene name LOC106571429
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23403301 ~ 23405523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU782452
AATGCTTGGCTCTGTCACCTTTATTAGTTGCAAGATCTACTCAATTTGATGAAGACAGGATACTTAGCGTACTATCAGCAGCAACAGATGAATACACAGCAGAAGAGAAGTAGAGCAAGTATCAGTCATATCAGTCAGGGAAAGAAACCTACCACTTGTGTACAGTGTGAGTGGAATAAACTCCCTTAGACACTGTACAGTATAGTCTATCAACATTTCAATTTCCCCTGGGAACTACTTTCAGATGAGTGTTCCCTCACTATGATCCCAATAATAACTGTCACTGTATTACTATAGCTACAAAATTAAACTTGCCCTGGACCTTTTCTACATACAATTCTCATGTATTTCTGACCTATTCCACCTTTCAGTTTCTGAATAATCAGGTACAAGAACACAGGGTATTTGGATTATGACTTCATAATATTTATGGTGGATAATATCCAGAAGTGGTCTCAACTACAACACTGGATATCATAGAATATAGAGCGTAGAACAGTCTCTATGATAGATATACACTGTATGCCGATAGAATATTGAACGTCAGAGTATAGCAAGACTATAACTATAGTATTTTTTGTGTGCTATTTATCGAGGGAAGCAATCGAAGATAATTGGATGTGAGTAGTGATTTGAAACCTTTGCTTTTTAATGGGTTATGCATCCAATGAGCACAGATGAACAAGGGAATATTtgtatgtatactgtactgtgtcCAATTGGAAACGCCAGAACAGGACATAAACATCATCTCCATTGTCAGTTCACCTCCTTATATCTATGGAAAGATTGaagtctctttctctcaacagtGATTAGAATTACATAAGTATGCTAAATAATAGATCAAATAGGAATTAAACATACAGACGTTTGACAAGGATACTAGTTACTAGAAGGCAATTTCAAACACTATACATTTAAAGGTCTACCAACTCTTCGATTTCCGATATCCCAGCTATACAGTTGTAACAGTCTCTTGGTCAGGCTATGAAGGGCCTGCATGTGTTAGGATGCTGCCTGTTCACAAAAAGAAAATATCATATGCCTACACTACCTACTTATAAAAAGGATTCCTGTCACTACATTTGACCGTTATTGTGTTTTAAAGTGATAACTAGAAGGATTATTAAGATTTAGTATTGATATTAGTTTATCCTTTTGAAACATGCCCATTTTCTGGGGAGATATGAAGCAGACTACAAAACAGgctcaaataaaatacaaatgaattacaaatcatttatgctgaagagaaacagacagtgtTCATGTATCCAATGATAATGCAGGTTATTGTGTCACAGATAGCACACTCTCAGTGGTGTATAACAATAGGGCATGTGGGCGGTGCAGAGTCCAATATCAGTTCCCTCGACTCTTAACTTTGAACCATGACCTTTACCGCCTTCAACCCAGTTCaagaaaaagtaaaaaaaataaatcagaCATCTCCCAGAAGACCAAACCAATCCCTTTGCTCCCACTAAGCATAAACACAAAGTTTCTGCTTTTCTTTGTTTCTTGTTGAAGCGTGGTTGTCCAACCTTGATACATTTACCTCCTTCCTcttacccactccctctcttcttccctcttactcactccctctcttgttCAGCGCCCTGAGGAGGTGAgcgtgcgggggggggggggggggggggggggggggctactcaGCAGTGATTTTCCTCTTGGAAGGGGGGATGAGATGACCGGGGAGGTCGGCGGGTAGCTCGTGCCCCTCCAGTTTGACTTTGATCAGGTGATTGGCCAGGGCAAACTCCTCGTCATCCAGCATCCCATCCTTATCGATGTCAGCCAGCTTCCAGATCTTTCCCAGCACCGTGTTGGGAAGCTTGGACTTCACCATCTCTTTCTTGGCGTTGGCACCAGTCACCTTCCCGTTGACCGGCGACAGCGTGTAGAAGATCTCATCGTACATGGGCTTGTCGCGGGCCACCACCCACTCTGCCTCATCGATACCCTCCCCGGCGCCCTCGCCATAGCCGTGGCCGAAGGGCCCGTTGAGGGTGCCGTCGAAGGCCCCTCCCTTCACCACCTGCTGGGGTCGGTTGGTCTCCTCCTGTCTGACCAGCACCATGAGACCGGCGATGTCGTGGGCCAGCATGTCGTCCACCGTGTCCAGCAGCTTTATCTTCAGGGGCTGGAACTTGTTCAGGTCGTGGGCATTAA

Function

NR:

description
EH domain-containing protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU782452 True 2196 lncRNA 0.44 2 23403301 23405523

Neighbor

gene id symbol gene type direction distance location
galnt14 LOC106571428 coding downstream 37510 23260188 ~ 23365791 (-)
angel2 angel2 coding downstream 144179 23253587 ~ 23259122 (-)
nsl1 nsl1 coding downstream 201068 23199511 ~ 23202233 (-)
batf3 LOC106571544 coding downstream 205051 23192564 ~ 23198250 (-)
adat2 adat2 coding downstream 252052 23146458 ~ 23151249 (-)
LOC110529641 LOC106571433 coding upstream 122107 23527630 ~ 23582982 (-)
LOC110529643 LOC106571435 coding upstream 209415 23614938 ~ 23659111 (-)
LOC110529644 NA coding upstream 273308 23678831 ~ 23682862 (-)
LOC110529645 NA coding upstream 288938 23694461 ~ 23732156 (-)
LOC110531080 LOC106571440 coding upstream 386476 23791999 ~ 23805391 (-)
G687137 NA non-coding downstream 34198 23368354 ~ 23369103 (-)
G687121 NA non-coding downstream 55427 23347201 ~ 23347874 (-)
G687029 NA non-coding downstream 125952 23275820 ~ 23277349 (-)
G687075 NA non-coding downstream 153561 23245556 ~ 23249740 (-)
G687024 NA non-coding downstream 194486 23207872 ~ 23208815 (-)
G687155 NA non-coding upstream 16143 23421666 ~ 23422179 (-)
G687174 NA non-coding upstream 45058 23450581 ~ 23450931 (-)
G687184 NA non-coding upstream 58022 23463545 ~ 23463755 (-)
G687197 NA non-coding upstream 76433 23481956 ~ 23482279 (-)
G687210 NA non-coding upstream 114938 23520461 ~ 23524038 (-)
G685953 NA other downstream 1242259 22159030 ~ 22161042 (-)
LOC110529207 sprtn other downstream 1478393 21920427 ~ 21926307 (-)
G684844 NA other downstream 1924098 21478766 ~ 21479203 (-)
G681659 NA other downstream 4611164 18791230 ~ 18792137 (-)
G679471 NA other downstream 6288773 17113543 ~ 17114528 (-)
G687890 NA other upstream 229786 23635309 ~ 23637408 (-)
G687979 LOC106571438 other upstream 349309 23754832 ~ 23756910 (-)
G688109 NA other upstream 582576 23988099 ~ 23988854 (-)
G688366 NA other upstream 1019540 24425063 ~ 24425553 (-)

Expression


Co-expression Network