G687295


Basic Information

Item Value
gene id G687295
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23681225 ~ 23697472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU782615
AATGATCTTGACTGAATGACAGATATACACAGAACATGGGTGAACTACCTTTGGCTTCATGTTCAGCCGGTTCAGAATTTTACCAACTGCTGCTTTGTTGCGAGGACAGTTCAGTAGTCCTCCCTTACTCTCATGGAACAGACAGTCCACTGTGAGTATTACATCACTTCTGGTCACTAGTCTGCTGCTGTCAGGTACAGTGCAGTCTGGGTTAAAATAATGATGCAGGACTACCAGAATGACATCTTTACCCTCTGTCAAAAGAATGAGGGACAAACAAAGCATTTATTCATGTCGTTAGCCACCTGATACATGTTTTATCTAGATCAACTGATATGGAGATAGAAGAGGTAAAATTTACAGTAGTATAGTTGGAGGATACTTTGGGGTTTGGCTACCTGGAATCTGCTGCTGTGCTGCCTCAATATCAGTACCAGCACGAGAGACGATGGTACAGAAAGCCATGATGACATCACTCTGCTCTGGTGACATCACTTCAGTGAAGCCTCCTCCAAGTTGTCGCATAAACTGGATATGGGAATCCATAGTATTGCCGGTGGTGATGGTGTAGTACCTCATCATCCTTGGCACCTCTTGAACCATAATGGTGTGAGAATTCCTTTGGAAGATGACTATTGAAAGACAATCTGACTACCTTCTTTGATGCCCAGAGGAAAGTGAAAAAGTACACAGCTTGAGGGAAAAGAGATGGGTTTTATCAGAAACAGTTTTACTTTCATATTCAAGAGACATTATAGTAGGCTTTTAGAACTGCAGGATCACCTGTTTTTTCAACTGGCCGTAGTTAACCATTAGCCTGTAAAACAACTTAAAAGCCTCTTTAACATTCATTGTAAAagtaaaaaagaaaataaaaaattatataaCTTGTCACCAACGTTATGAGTATTATTCATACAGAAATCACATATTAGTGATTAAATTGTGATATTGTTGTTAATTAGACACTGTCTCTGGACCAGCTACAAGGCTTGGGGGCCATGTGGGGGAATGCATGTAGGGTAGAAGTAGCTGATCTGGAATCTGTTTTGCGTCTGCTCAACAAAACCAGTTTCTACTGGTCTGCTGCAAGAAAAGGTCCCCTTTTCAGTTGTGGTGAATGAGATGAGAATCTTGTTTGTTGTGTCCGCGAAGAGGGCGTTTCAGGAATGAAGTAATCTCTAAAAAGGTATGCAATATGGAGAATGAATACTTTAGTGTTTCTCTTTGCCAGAAGATACCGACTACAGCTGTGCTTGTTTACACTGCCTACACTGAGGTCGGAACGCAATCATGGTTTCATCAAGACACCGATGAGCCGGCGGCAGATAATGATTAGAAAACGTACCTCAATGCAGGGATGGGATATGCCACTGTACCCCAAATGTTACCTTCATCCACATTGCTCCATCAagaagattgaaatactgctaGTTTTACGTAAAACTTCATTTTTCGTCCTCATGCTAGCTACCAGTAGCCACAGCAGCCGTTATGGAATGGCATGTAGCGTTGaacaacaaaggagctgattggctgacactgTCATTCCAAAATTGGTGAGTGGctactgctagctagcatgagGACGAAAAGGGCAATTTTCTGTAAAACTAGCAGTATTTCAATCGTCTCAATATATGTGTAGAAAATGTAACATTTTG

Function

NR:

description
uncharacterized protein LOC109900774

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU782615 True 1664 lncRNA 0.41 3 23681225 23697472

Neighbor

gene id symbol gene type direction distance location
LOC110529642 LOC106571434 coding upstream 66321 23585720 ~ 23614904 (+)
LOC110529640 LOC106571431 coding upstream 159967 23484408 ~ 23524035 (+)
LOC110529639 LOC106571429 coding upstream 275702 23368309 ~ 23405523 (+)
vash2 vash2 coding upstream 431439 23221529 ~ 23249786 (+)
flvcr1 flvcr1 coding upstream 460414 23209228 ~ 23220811 (+)
znf512 LOC106571438 coding downstream 49924 23747396 ~ 23756935 (+)
LOC110529209 LOC105017758 coding downstream 132286 23829758 ~ 23839607 (+)
LOC110531081 NA coding downstream 149717 23847189 ~ 23872593 (+)
LOC110529647 LOC106571442 coding downstream 182264 23879736 ~ 23882523 (+)
trnaa-ugc-24 NA coding downstream 257907 23955379 ~ 23955450 (+)
G687292 NA non-coding upstream 8548 23672247 ~ 23672677 (+)
G687290 NA non-coding upstream 12326 23668591 ~ 23668899 (+)
G687285 NA non-coding upstream 22122 23658063 ~ 23659103 (+)
G687274 NA non-coding upstream 36572 23643335 ~ 23644653 (+)
G687282 NA non-coding upstream 42169 23638670 ~ 23639056 (+)
G687334 LOC106594194 non-coding downstream 38869 23736341 ~ 23736614 (+)
G687337 NA non-coding downstream 41971 23739443 ~ 23739657 (+)
G687344 NA non-coding downstream 61661 23759133 ~ 23759472 (+)
G687345 NA non-coding downstream 62279 23759751 ~ 23795155 (+)
G687351 NA non-coding downstream 72834 23770306 ~ 23780026 (+)
G686448 LOC106571417 other upstream 708389 22946501 ~ 22972836 (+)
G685551 NA other upstream 1199086 22480323 ~ 22482139 (+)
G685469 NA other upstream 1233152 22446771 ~ 22448073 (+)
LOC110529616 LOC106586086 other upstream 1248190 22419790 ~ 22433035 (+)
LOC110529210 ift172 other downstream 286973 23961761 ~ 23991295 (+)
G688613 NA other downstream 1285257 24982729 ~ 24984826 (+)
G688823 NA other downstream 1361481 25058953 ~ 25061450 (+)
LOC110529690 LOC106571476 other downstream 1981180 25678604 ~ 25685894 (+)
LOC110529702 LOC106607944 other downstream 2435719 26133191 ~ 26195544 (+)

Expression


Co-expression Network