G688369


Basic Information

Item Value
gene id G688369
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24429877 ~ 24434825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU783837
ACAATTATGTTACCAAAATTCATTCACTTAAACATTTAACCTTGAGAAATCATGTCCTCCAGGGTGGTCAGACACAGATACAGCCACTACTGAAGAATTCGCTCACAGACCTAGGGAGTGTTCAGTAATGTCCAAAACAGAAAATGTTTGCAAACTGAAAAGGTACCACTTGAGCTTTTCCGAAAGGGAAGCTCGATtcagttatttttttaaaaccttgGCTCCCATTGACATAATGAACAGAACACAGATCTCATTCTGCTTGGTAAATGAGAGTTCAACTCCACCCTATCACAGCTGCCCCTTTGTAGTGTGCTCCTAGTTCGAGCTAAATCAACTTCCATGACATCCAACAATATGACAAAATAATCATGATACAGAGATCATATGAAGGCACAGCCAAAGCAGTGTAGTTGACCAAACGCCACTGCTTATGGTTTTTGGGAATGCATACTAGGAAGAATTCATACAAATTGGAGAACAAATATTAATAATAAATATTGAGTCAGAATATTTATTATCTTTTGAAATGACCAAGTGCCATGCTTCTCTCTCAAGGCCAAGTGCATTTTAAATTTAAACTAAACACATCTCATAGTACATTGGTATGGATAGAAGCTATTCAGGATTGATCATTTTTAGGACGCAATGGTTTACAGATCTTCTACTTTACGGTTCAGGCTGTAAATTGACTTAGTCCAATCTATGATTTAGCTGGTGCAAGCAAACTCAATACAACCGTTTTGCCCTTCATATTCACGTGTCACTTTACAACTCATCTTTTCTAGATAGTTGGCCCTGTCAACTTAAAAACAAGATCACAGAATAGGTCTCGATTGTGCTCTGAGTAGATGTCAGCATTACTAAAACAAAGTCCTAAACTCACATTGGGTAAATTGACATCTTGAATAACAGTATCTCAGCACTGCAGACTGTAAATTCATCCAAAACATGTCCTGGAAAGGGGTGGTCTTCACTTAATTTAAAGTTTAGCGTTACAAACACTTCCAAGTCATTTCTGGTATGATTAAAAAGGAATTAATTCAGTCATATCTTATCACAGACTATCAAATCAACTTTATCAACAAAATATCAAACTTTGTCGGTCACAGGATGTCAATTAAAAAAGGACTAAAAAAAACCTCTAAGAACGATAGAAATGTTTGTGAATGTTACAACAAGAAGGGATAGCCCTAACTTCATTACGTACAAACATACAGAAAACGATAGTTTGAAGTTGCTTTGTTGTGCAAACACAGAAATAGTATAACTACTTGACCACTTCTGCCCTCCATTCACAAAACATTTCAATGGTACTTGCACatagaaaggggggatacctcgTCAGTTGTACAATGTATtcgactgaaatgtgtcttccgcatttaacccaacctctcaAAATCAGAGTTGCGGAGAGCTGCCtaaaatcgacatccacgtcatcggagcccaaggaacagtgggttaactgccttgcttagGGGCAGAGCGAAATATTTTgatcttgtcagctcggagattcgatcCAGCTACCTTTCGgggtactggcccaacgctccaacccaccaggctacctgccgccactcaAAAGTTCCACAACATAGTTCCATTTGCAACAAATAGTAATGAAGTcaatggaaatatagatatatattCTCTCTTTTGGTAATAAACTATCAAAACAAAGCGATGACATCATTTTCTATATGCTTTGAACGAGAAGAGGTATTTTTTCAGTGGGGATGAATGAACAACATTCCTTGCTCGTATCGGACTGTAGCCATAGGATCCAATGCAAAATTTGCCTGTATGTCATTGATAACAATGGTATCAGAAGCCTAATAGCATGGCATTCAGTCAGTAGTGTCACAACATTAGCcccacaataaataaataatatatctATCTGCCCATCCATAGCCAGAGTTTCTTTATTCCCCATAAAGGTAGACGGGGTAAAAAGGCAGGTAGAAAATGGCTCTACAGAATTTATGTAAAAACTCTTTGGAAACAATTAAAGCAGATTGGTATGGGCTGAATGAGTCACTATGTAGTCAATCAAAAGTTATCCCAACCCAAACCACAGTAAGACAGATGGACAGGCATGTCACTCGAGTCCCCAACTACAGAAACaaccacagagagacaaacacacacaagtagAGTCCCTGTTTGAGGGACAAACAGGCCATATGGAATCACAAGCTCACCACATACCAGATAATCTCAACAGAGTACTACCACATTACCCTGACTTGAATTCTGTAGTGTGGTTAGGTATTCCAGTGGATGGGAGGAGTACAAAATGAAGATGTTGAACAGAGAATGACATGAGAATTCTTCAGATTGCAAATAGGACCTTGAAACATGAATATGAAACATTTGACAAATGATCATTAAAATTCAACATCTGCTTTCATACTCATCGAATgaccaaaataaaaaaaattcttcATAATAACAATGTTAAATCAACCGCCGATACTGTTCTGGAAAAACATTTACATCATTAGATAAAGTGGCCACTTACAAAAACACGCCATAAAACATTGTACTTATTTCATTTGAAAATTATTGGAAGTTTTCCCCTGGTACATTGAACATCAAGAAACAGTGAAGTGCCAAAAGGAAACCAAGTCCTTCAAAGATACAACCAAAGAACATCACATATATTAGTCTACCCTAAGATTTCTGAGTACTGAACTCTGTTGAGCCATCAAAATGGCTGCAGTTTTCCAGTTTGAACCAGAGCTGTTCCCTTCACTGTAAATATGCTCTGTTAGAGCAGTGGGGTGGACGAGACACAGGTCATACATGTAAATCTAACAAACATCGAAGACACATATGGAGAATCATTATACATGTACTATGCAGTATAAGTATACTGTATCACAATCCTAATTACACACTGATCAGTAATCAAAATTAAACTACATTCACACACTGCCTACTAATGAGGCACCTGAAGTAACTATGGGATCTACAGTGTGAATGGACTGTGAGGATAAGGTATTCTACATGCATTAATGTCACTAGCTAACCAGCAGGTTATCTGGTTCTCGATGAAGTAGTAGTGCAGACTCGATGACCTGAAAATGTGATCCCAGTTAATGGCAAATGAGGTTATGTCTTGAGCTCCATCTACAATATATAATTGTATGGCATGTTAAGAGTGTTTAAGGTTATCTACCTCTTTATTAAGTTACTATAGCAAGCCAAATAAGGCCATGTAAAGGAGCTTTAGGAACCGTCTACAGGGACATaaaggattattattattatcatcatcatcaagttCTCTGGAACCCTCTCTCCGATAGCTAAAGGTTTGAAGATTCTGGGCATGTGTGGGATTCTGTACTTTACACAGTCTATGCTCTACTCGTTCAGCTGCCCAGAGAACAGGCTACACTGGCGAACGGTGCTGGTTTAATAAAGTTGGATCAAAGTGGAATCAATGTCTGTAAGATCACAATCAACCTCCCTTCACATTTCTCACAGTCAATCATTAAATGGTAATTGTTGGAAGTTTTATTGGTAAAACGTAAATGCAGCATCTGCATGCTAACCATTTGATCTCAGTTTAATAGGGTTATGCATTTACATCTCTACAGTGTTGTTTTGAACAATGTAGTGAGCTAATTATTTAGTAGATGGTGCTAACAAGCTGTAGCATGCTTGTGTTTGGTTTCAATCAGGCACATATTTTGCCTGGTGGCACATGTTGTTGAGCTTCGGCCACTTGAGAGAAAAATGTGACCCGTCGCACAATCGTCCTAAAATGAGGTTGTTCGTCCTACAGCAGCATAATGTTCCACTATGCCATTATATGTGGCTCTGTTATGTAGAATACTATCATTATGTGGTCTTGCAGACAtggattcagctttgatctaactttattaAACAAGCACCATTTCACTAGAGTAGCCTGTTCTCTGGGCACCGTGGGCAGCCGAAGGAGTAATACAGACTGTGCGTAAAGTAGAGAATCATGCACATGCGCAGCTTCAAACCTTTAGCTGTTGGGAAGAGCATTCAAGAGAACTCGGATCGCAGCCACACGGTTTTAAAAATTCTTATAGTTCATCTGACTTAATCTTTTCTATAAAAATAATATGCAATGACAGTTAAATCTGAAGTACCTCTTCTCCGCCTGcgaatttgacattttagtcatttagtggACTCTTATCCCAAGACTTACAAGAGCAACGAGGGTTAAGTGCCTAACTCAAGGACACATAGAACTATTTtttacctagtcggctcggggataaAAAACagggacctttcggttactggcctaatgctcttaatcactaggctacctgctctctACCCGATTCTCTGAGAAACAAAAGACTTGGGTCCATCACAGTCATTTGAACAACTTAGTGCATGTGTATGTCCACAATCTTTCAATCATACATTTAACAAAATATCCGAATGACAGTCACAGCCCTTTTGTTCAGTCCAGGCTCTTAGATCTACTAACTAGACAACAATGAGACTTCTCCTCAGCACGGCGCATGATTGCCACTTGTGTTGCGCTAGCATTTCTCCATCCAGGAATCCACCTCAATTCAGACATTTTGGCTCTTCTCAAAACTCCAGGCTCATAAGTAGTGATTTCCAGTTACTTCAGTTTAGGGAAACTGTGACCAGTGCCATCCTTAATGACGTATCAATGATTTCAAGATACACACGATTTGTGGCTGGGGGGGGGTCCAGTTGTAAGTGCACTATTCTTCATTATAGCAGAGGACTCTGGCACTCTTAAAAACCACCATATATTTGTGGTGTATCAGTTTTTCCAGGGAGTAAGGGTCAGGGGTGAATCTCCCTGTTTCCACATTGACCCTGTGGTTCTTGATGGAAGTCATGACCAGGCACACTGGATCTCCGCTGCCTCTCTGGCCCCACGTGGGTCCTCTTCCCAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU783837 True 4949 lncRNA 0.40 1 24429877 24434825

Neighbor

gene id symbol gene type direction distance location
LOC118965504 NA coding downstream 18043 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 31940 24297942 ~ 24397937 (-)
LOC110529654 NA coding downstream 139768 24283391 ~ 24290109 (-)
LOC110529653 rcan2 coding downstream 185997 24125758 ~ 24243880 (-)
si:dkey-221h15.4 LOC106571445 coding downstream 474119 23952710 ~ 23955758 (-)
LOC110529659 LOC106571449 coding upstream 1672 24436497 ~ 24438647 (-)
LOC110529658 LOC106571450 coding upstream 4142 24438965 ~ 24446940 (-)
srp09 srp09 coding upstream 12768 24447416 ~ 24449348 (-)
LOC110529662 LOC106571455 coding upstream 304232 24739057 ~ 24795416 (-)
LOC110529665 LOC106571552 coding upstream 557710 24992535 ~ 25010299 (-)
G688338 rpl7l1 non-coding downstream 28736 24379303 ~ 24401141 (-)
G688192 NA non-coding downstream 311457 24118213 ~ 24118420 (-)
G688191 NA non-coding downstream 312092 24117540 ~ 24117785 (-)
G688167 NA non-coding downstream 313235 24084060 ~ 24116642 (-)
G688038 NA non-coding downstream 334947 23843168 ~ 24094930 (-)
G688375 NA non-coding upstream 10996 24445821 ~ 24446118 (-)
G688446 NA non-coding upstream 127228 24562053 ~ 24586713 (-)
G688464 NA non-coding upstream 156510 24591335 ~ 24591789 (-)
G688466 NA non-coding upstream 162884 24597709 ~ 24597938 (-)
G688366 NA other downstream 4324 24425063 ~ 24425553 (-)
G688109 NA other downstream 441023 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 672967 23754832 ~ 23756910 (-)
G687890 NA other downstream 792469 23635309 ~ 23637408 (-)
LOC110529643 LOC106571435 other downstream 808631 23614938 ~ 23659111 (-)
G688480 LOC106571453 other upstream 194729 24629554 ~ 24631049 (-)
G688537 NA other upstream 246142 24680967 ~ 24681426 (-)
G688922 NA other upstream 301221 24736046 ~ 24737040 (-)

Expression


Co-expression Network