G688480 (LOC106571453)


Basic Information

Item Value
gene id G688480
gene name LOC106571453
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24629554 ~ 24631049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU783950
CCAGACAGCTGGGTGAAAATGTTTCCATCCATGTTTTTAAAACGGTTTCCACTGAGGGCCAGCTGGGAGAGCTTGGGTGTATGTCTAAACAGGTCCTGGGGCAGCCTCTCCAGCTCGTTGTTCCTCAGGTAGAGCTCCTGGAGGTTGGACAGGCCCTCCAGAGTGGCTGAGGTCAAAGTGGACAGCAGGTTGTTATCCAGCACCAGCATCTCCAGGGAGGCCAGAGGCTTGAAAGCACCAGCCGAGATGCTCTTCAGACTGTTGTTGTCCAGGTTGAGGAACAGCAGCTCTGTTAAGCCCAGAAAGCCTTTGGGGGAGATCCTCTCGATGCGGTTGAGGGCCAGGTCCAGGACCTTTAGGGCGATCAGAGGCTTGAAGGCGTTGGAAGGAAGGGCAATTAGAGAGTTGAGGGGCAGGTCCAGGTCTGAAAGGTTCCTCATGCCTGTGAACATGTCTGGTTTGACACTGGAGATCTGGTTCTGGCCCAGCATGAGGAAGCGGAGGTTGATGAGATCCTGGAAGCCTTTCACAGGGAGTTTGTTGATCTGATTCCCATACAGGTTGAGCAGCATCAGCCTCTGGGCTCCAGAGAAGGCCTGGGGGTGTATTGATTTGATGGCATTGCGTTCCAAGTTGATGCTTTCGATCTTGGGGATGGGTTTCAGGACGTTTGCTGGGAGGTCGACTATTCCGTTCTCGCCCATCTTTAGGATCCAGGAATCAGGGGGCAGGTTGGAGGGAAATGTCCTTATCCCCTTCTTGTGGcagttgacctctgacctttcaGGGCTGGTTTTCTTGGTGCATTTACAGACATCAGGACAGGTCTCTACAGCTTCTGCCACCCAGAACACCAGCACTGCTAAACAGGCTACCAGCTGCATGCCTACTACAGAAAAGTATTCAGCGCTTGCAGACTGATTAAGTTTGACAATTTAGTTTGTGTTGGAAGGACGATTAGAAATTCAATTTAAGATAATCCTATTTAAATTATATGAGCGTATTAAGAATGAACATTTTGCAGACATGCTCCAAAAAAATATAGACAAGTGCAGGGTGAAAGGCTGCAGAGCTACAGTTTATGCTATTAGACTGATCAATATTTTCTTATCAGCATTTACCTGAACATTTGGTGAGACTTGTCGTCGCATAAACCTCTTCTTTAAACTGTCTACTTTGTTTTGCCTCTCAAAGCGAGGGAGTCAGATTTTCTTAAGCTGCCTGTTCTGCTGTCGTGTAACTTCCTGTTAGTCAGAGTGAATTAGCCCAGCCGTCTGCCCAGCAGCTACAGCAGCCAGCCTGCAAAACTACCAGCACAG

Function

NR:

description
leucine-rich repeat-containing protein 15-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU783950 True 1319 TUCP 0.49 2 24629554 24631049

Neighbor

gene id symbol gene type direction distance location
srp09 srp09 coding downstream 180219 24447416 ~ 24449348 (-)
LOC110529658 LOC106571450 coding downstream 182614 24438965 ~ 24446940 (-)
LOC110529659 LOC106571449 coding downstream 190907 24436497 ~ 24438647 (-)
LOC118965504 NA coding downstream 217720 24404911 ~ 24411834 (-)
ncoa1 LOC106571447 coding downstream 231617 24297942 ~ 24397937 (-)
LOC110529662 LOC106571455 coding upstream 108008 24739057 ~ 24795416 (-)
LOC110529665 LOC106571552 coding upstream 361486 24992535 ~ 25010299 (-)
cd2ap LOC106571457 coding upstream 429638 25060687 ~ 25134641 (-)
mep1a.2 LOC106571460 coding upstream 645407 25276456 ~ 25288041 (-)
LOC110529672 LOC106571463 coding upstream 659160 25290209 ~ 25294380 (-)
G688467 NA non-coding downstream 31112 24598146 ~ 24598442 (-)
G688466 NA non-coding downstream 31616 24597709 ~ 24597938 (-)
G688464 NA non-coding downstream 37765 24591335 ~ 24591789 (-)
G688446 NA non-coding downstream 42841 24562053 ~ 24586713 (-)
G688491 NA non-coding upstream 21481 24652530 ~ 24652894 (-)
G688564 NA non-coding upstream 70457 24701506 ~ 24701933 (-)
G688583 NA non-coding upstream 81416 24712465 ~ 24712754 (-)
G688584 NA non-coding upstream 81939 24712988 ~ 24713254 (-)
G688605 NA non-coding upstream 100781 24731830 ~ 24732096 (-)
G688366 NA other downstream 204001 24425063 ~ 24425553 (-)
G688109 NA other downstream 640700 23988099 ~ 23988854 (-)
G687979 LOC106571438 other downstream 872644 23754832 ~ 23756910 (-)
G687890 NA other downstream 992146 23635309 ~ 23637408 (-)
G688537 NA other upstream 49918 24680967 ~ 24681426 (-)
G688922 NA other upstream 104997 24736046 ~ 24737040 (-)
G689656 tlr5m other upstream 745073 25376122 ~ 25407347 (-)
G689685 NA other upstream 779774 25410823 ~ 25411132 (-)

Expression


Co-expression Network